orange1.1g021525m.g (Citrus sinensis)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 orange1.1g021525m.g T250800_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G58630
M06976_2.00
Arabidopsis thaliana
HNTCGCCGGARWHDN

NHDWYTCCGGCGAND
Dap-seq
OMalley et al.(2016)
AT3G58630_col_a
0.877 0.653
AT3G58630
M06977_2.00
Arabidopsis thaliana
NNTCGCCGGARWHDN

NHDWYTCCGGCGANN
Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a
0.877 0.653
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g021525m MADF 45 125

Links

Other MADF family TFs
Other Citrus sinensis TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
13522_YKL038W Saccharomyces mikatae 13522_YKL038W I 0.000
13626_YKL038W Saccharomyces paradoxus 13626_YKL038W I 0.000
14629_YKL038W Saccharomyces bayanus 14629_YKL038W I 0.000
CAGL0L01903g Candida glabrata CAGL0L01903g I 0.000
KLLA0_F25630g Kluyveromyces lactis KLLA0_F25630g N 0.000
KNAG_0A07100 Kazachstania naganishii KNAG_0A07100 I 0.000
Kwal_8109 Kluyveromyces waltii Kwal_8109 N 0.000
NCAS_0A04750 Naumovozyma castellii NCAS_0A04750 I 0.000
NDAI_0K01800 Naumovozyma dairenensis NDAI_0K01800 I 0.000
RGT1 Saccharomyces cerevisiae YKL038W D 0.000
Scas_Contig625.5 Saccharomyces castellii Scas_Contig625.5 I 0.000
SU7_2014 Saccharomyces arboricola SU7_2014 I 0.000