Pavir.Aa01102 (Panicum virgatum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Pavir.Aa01102 T250805_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK26075.1
M01265_2.00 		Cannabis sativa
NNRGTDANWN
NWNTHACYNN		 PBM
Lambert et al.(2019)
pTH11260 		0.878 0.739
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa01102.1.p MADF 111 182
Pavir.Aa01102.2.p MADF 111 182

Links

Other MADF family TFs
Other Panicum virgatum TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_6DL_09329CC5D Triticum aestivum Traes_6DL_09329CC5D I 0.922
OBART10G15720 Oryza barthii OBART10G15720 I 0.890
Traes_1DL_9EFDBD741 Triticum aestivum Traes_1DL_9EFDBD741 I 0.879
PK26075.1 Cannabis sativa PK26075.1 D 0.878
Traes_4DL_64E445D4A Triticum aestivum Traes_4DL_64E445D4A I 0.868
OLONG_007248 Oryza longistaminata OLONG_007248 I 0.867