Pavir.Ab01874 (Panicum virgatum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Pavir.Ab01874 T250808_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab01874.1.p MADF 790 855
Pavir.Ab01874.3.p Myb 773 832

Links

Other MADF family TFs
Other Panicum virgatum TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sb04g005900 Sorghum bicolor Sb04g005900 N 0.954
ORUFI02G20630 Oryza rufipogon ORUFI02G20630 N 0.940
Si016284m.g Setaria italica Si016284m.g N 0.909
Solyc03g111260.2 Solanum lycopersicum Solyc03g111260.2 N 0.889
PGSC0003DMG401015244 Solanum tuberosum PGSC0003DMG401015244 N 0.889
LPERR02G15710 Leersia perrieri LPERR02G15710 N 0.861
Gorai.003G119600 Gossypium raimondii Gorai.003G119600 N 0.859
OPUNC02G17490 Oryza punctata OPUNC02G17490 N 0.852
Pavir.J05591 Panicum virgatum Pavir.J05591 N 0.852
OB02G27300 Oryza brachyantha OB02G27300 N 0.850
Aquca_040_00045 Aquilegia coerulea Aquca_040_00045 N 0.845
OMERI02G19460 Oryza meridionalis OMERI02G19460 N 0.837
OLONG_005200 Oryza longistaminata OLONG_005200 N 0.837
OS02G0539600 Oryza sativa OS02G0539600 N 0.837
OGLUM02G19870 Oryza glumaepatula OGLUM02G19870 N 0.837
ORGLA02G0167800 Oryza glaberrima ORGLA02G0167800 N 0.837
ONIVA03G19920 Oryza nivara ONIVA03G19920 N 0.837
OBART02G19580 Oryza barthii OBART02G19580 N 0.837
BGIOSGA008381 Oryza indica BGIOSGA008381 N 0.837
Sb04g005902 Sorghum bicolor Sb04g005902 N 0.834
GLYMA17G13780 Glycine max GLYMA17G13780 N 0.826
TCM_014612 Theobroma cacao TCM_014612 N 0.815
GLYMA04G37020 Glycine max GLYMA04G37020 N 0.812
GRMZM2G134439 Zea mays GRMZM2G134439 N 0.799
BRADI3G45230 Brachypodium distachyon BRADI3G45230 N 0.798
GRMZM2G326783 Zea mays GRMZM2G326783 N 0.797
Traes_6BL_1392D6149 Triticum aestivum Traes_6BL_1392D6149 N 0.792
F775_27241 Aegilops tauschii F775_27241 N 0.792
Traes_6DL_88259C187 Triticum aestivum Traes_6DL_88259C187 N 0.792
MLOC_62598 Hordeum vulgare MLOC_62598 N 0.792
TRIUR3_27498 Triticum urartu TRIUR3_27498 N 0.761
POPTR_0012s09780 Populus trichocarpa POPTR_0012s09780 N 0.703
Traes_6AS_0D7F17F06 Triticum aestivum Traes_6AS_0D7F17F06 N 0.696
SapurV1A.0841s0060 Salix purpurea SapurV1A.0841s0060 N 0.693
GLYMA06G17980 Glycine max GLYMA06G17980 N 0.669