CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ab02437
(
Panicum virgatum
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF10545 (MADF_DNA_bdg)
IPR006578
Pavir.Ab02437
T250809_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT-GTL1
M06968_2.00
Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_col_a
0.895
0.691
PK15172.1
M01263_2.00
Cannabis sativa
NNNGTWAHWN
NWDTWACNNN
PBM
Lambert et al.(2019)
pTH10125
0.938
0.743
AT-GTL1
M06969_2.00
Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_colamp_a
0.895
0.691
OS02G0104500
M02271_2.00
Oryza sativa
NDGTAAWWHN
NDWWTTACHN
PBM
Weirauch et al.(2014)
pTH8719
0.863
0.600
OS02G0104500
M02272_2.00
Oryza sativa
NDGTAAWWHN
NDWWTTACHN
PBM
Weirauch et al.(2014)
pTH9273
0.863
0.600
For this family, TFs with SR scores >
0.812
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ab02437.1.p
MADF
106
177
TEMDADFRSAPLKAPLWEDVARKLAGLGYRRSAKKCKEKFENVDKYYRRTKDARAGRQDGRSYRFFAQLEAL
Pavir.Ab02437.1.p
MADF
429
502
DKDEQDHDAAGAKGPLWEDIAAAMRRIGYNRSAKRCKEKWENINKYYKKVKESNKRRPEDSKTCPYFHQLDAMH
Pavir.Ab02437.2.p
MADF
240
313
DKDEQDHDAAGAKGPLWEDIAAAMRRIGYNRSAKRCKEKWENINKYYKKVKESNKRRPEDSKTCPYFHQLDAMH
Pavir.Ab02437.3.p
MADF
11
59
LAGLGYRRSAKKCKEKFENVDKYYRRTKDARAGRQDGRSYRFFAQLEAL
Pavir.Ab02437.3.p
Myb
294
354
PSRWPKEEVQALIQLRTDKDEQDHDAAGAKGPLWEDIAAAMRRIGYNRSAKRCKEKWENIN
Pavir.Ab02437.4.p
MADF
240
313
DKDEQDHDAAGAKGPLWEDIAAAMRRIGYNRSAKRCKEKWENINKYYKKVKESNKRRPEDSKTCPYFHQLDAMH
Pavir.Ab02437.5.p
MADF
11
59
LAGLGYRRSAKKCKEKFENVDKYYRRTKDARAGRQDGRSYRFFAQLEAL
Pavir.Ab02437.5.p
Myb
294
354
PSRWPKEEVQALIQLRTDKDEQDHDAAGAKGPLWEDIAAAMRRIGYNRSAKRCKEKWENIN
Pavir.Ab02437.6.p
MADF
106
177
TEMDADFRSAPLKAPLWEDVARKLAGLGYRRSAKKCKEKFENVDKYYRRTKDARAGRQDGRSYRFFAQLEAL
Pavir.Ab02437.6.p
MADF
429
502
DKDEQDHDAAGAKGPLWEDIAAAMRRIGYNRSAKRCKEKWENINKYYKKVKESNKRRPEDSKTCPYFHQLDAMH
Links
Other
MADF
family TFs
Other
Panicum virgatum
TFs
246 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy