Pavir.Ab02437 (Panicum virgatum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Pavir.Ab02437 T250809_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT-GTL1
M06968_2.00
Arabidopsis thaliana
RHRGTAAAWW

WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_col_a
0.895 0.691
PK15172.1
M01263_2.00
Cannabis sativa
NNNGTWAHWN

NWDTWACNNN
PBM
Lambert et al.(2019)
pTH10125
0.938 0.743
OS02G0104500
M02271_2.00
Oryza sativa
NDGTAAWWHN

NDWWTTACHN
PBM
Weirauch et al.(2014)
pTH8719
0.863 0.600
AT-GTL1
M06969_2.00
Arabidopsis thaliana
RHRGTAAAWW

WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_colamp_a
0.895 0.691
OS02G0104500
M02272_2.00
Oryza sativa
NDGTAAWWHN

NDWWTTACHN
PBM
Weirauch et al.(2014)
pTH9273
0.863 0.600
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab02437.1.p MADF 106 177
Pavir.Ab02437.1.p MADF 429 502
Pavir.Ab02437.2.p MADF 240 313
Pavir.Ab02437.3.p MADF 11 59
Pavir.Ab02437.3.p Myb 294 354
Pavir.Ab02437.4.p MADF 240 313
Pavir.Ab02437.5.p MADF 11 59
Pavir.Ab02437.5.p Myb 294 354
Pavir.Ab02437.6.p MADF 106 177
Pavir.Ab02437.6.p MADF 429 502

Links

Other MADF family TFs
Other Panicum virgatum TFs

Invalid Input OrderBy

246 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action