CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ga00673
(
Panicum virgatum
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF10545 (MADF_DNA_bdg)
IPR006578
Pavir.Ga00673
T250815_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK15172.1
M01263_2.00
Cannabis sativa
NNNGTWAHWN
NWDTWACNNN
PBM
Lambert et al.(2019)
pTH10125
0.945
0.765
OS02G0104500
M02271_2.00
Oryza sativa
NDGTAAWWHN
NDWWTTACHN
PBM
Weirauch et al.(2014)
pTH8719
0.885
0.647
OS02G0104500
M02272_2.00
Oryza sativa
NDGTAAWWHN
NDWWTTACHN
PBM
Weirauch et al.(2014)
pTH9273
0.885
0.647
For this family, TFs with SR scores >
0.812
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ga00673.1.p
MADF
287
357
LDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKRPEDSKTCPYFHQLEAI
Pavir.Ga00673.2.p
MADF
287
357
LDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKRPEDSKTCPYFHQLEAI
Links
Other
MADF
family TFs
Other
Panicum virgatum
TFs
76 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy