Pavir.Ib00103 (Panicum virgatum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Pavir.Ib00103 T250822_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT-GTL1
M06968_2.00
Arabidopsis thaliana
RHRGTAAAWW

WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_col_a
0.877 0.732
AT-GTL1
M06969_2.00
Arabidopsis thaliana
RHRGTAAAWW

WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_colamp_a
0.877 0.732
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib00103.1.p MADF 90 161
Pavir.Ib00103.1.p MADF 460 531

Links

Other MADF family TFs
Other Panicum virgatum TFs

186 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.877
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.831
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.930
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.852
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.844
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.856
30206.m000769 Ricinus communis 30206.m000769 I 0.849
30068.m002635 Ricinus communis 30068.m002635 I 0.930
29576.m000223 Ricinus communis 29576.m000223 I 0.870
Pm024289 Prunus mume Pm024289 I 0.945
Pm022572 Prunus mume Pm022572 I 0.865
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.930
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.930
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.861
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.827
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.936
mgf021983m Mimulus guttatus mgf021983m I 0.831
mgf004276m Mimulus guttatus mgf004276m I 0.901
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.894
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.903
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.815
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.854
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.939
Pm022570 Prunus mume Pm022570 I 0.844
Pm001889 Prunus mume Pm001889 I 0.815
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.935
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.912
TCM_035571 Theobroma cacao TCM_035571 I 0.856
TCM_035565 Theobroma cacao TCM_035565 I 0.842
TCM_015563 Theobroma cacao TCM_015563 I 0.937
TCM_001348 Theobroma cacao TCM_001348 I 0.835
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.876
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.827
Si034382m.g Setaria italica Si034382m.g I 0.960
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.942
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.912
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.876
Cla007910 Citrullus lanatus Cla007910 I 0.824
Cla005046 Citrullus lanatus Cla005046 I 0.942
Cla001992 Citrullus lanatus Cla001992 I 0.854
Ca_25135 Cicer arietinum Ca_25135 I 0.818
Ca_04386 Cicer arietinum Ca_04386 I 0.842
Ca_04385 Cicer arietinum Ca_04385 I 0.838
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.872
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.814
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.931
Si016578m.g Setaria italica Si016578m.g I 0.893
PK26613.1 Cannabis sativa PK26613.1 I 0.826
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.961
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.935
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.897
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.881
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.883
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.870
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.928
MDP0000701272 Malus domestica MDP0000701272 I 0.927
MDP0000451107 Malus domestica MDP0000451107 I 0.840
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.931
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.880
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.820
PK24122.1 Cannabis sativa PK24122.1 I 0.842
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.827
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.887
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.839
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.851
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.876
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.839
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.939
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.847
MDP0000451038 Malus domestica MDP0000451038 I 0.936
MDP0000156139 Malus domestica MDP0000156139 I 0.847
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.881
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.928
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.883
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.870
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.827
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.852
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.881
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.871
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.827
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.849
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.851
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.921
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.821
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.830
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.926
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.814
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.931
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.842
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.862
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.855
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.930
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.852
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.823
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.882
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.869
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.896
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.906
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.882
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.902
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.946
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.821
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.834
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.866
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.942
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.892
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.829
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.833
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.913
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.932
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.940
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.926
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.946
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.956
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.900
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.821
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.859
Bo8g027460 Brassica oleracea Bo8g027460 I 0.822
Bo6g120870 Brassica oleracea Bo6g120870 I 0.827
Bo6g083690 Brassica oleracea Bo6g083690 I 0.827
Bo6g049430 Brassica oleracea Bo6g049430 I 0.880
Bo2g091240 Brassica oleracea Bo2g091240 I 0.839
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.932
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.940
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.924
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.926
Bra003702 Brassica rapa Bra003702 I 0.825
Bra003703 Brassica rapa Bra003703 I 0.826
Bra008285 Brassica rapa Bra008285 I 0.837
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.826
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.877
F775_26337 Aegilops tauschii F775_26337 I 0.942
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.932
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.921
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.938
Bra040010 Brassica rapa Bra040010 I 0.880
Bra036731 Brassica rapa Bra036731 I 0.822
Bra015716 Brassica rapa Bra015716 I 0.827
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.923
Si012121m.g Setaria italica Si012121m.g I 0.942
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.936
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.872
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.841
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.849
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.864
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.945
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.847
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.827
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.932
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.863
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.945
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.865
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.899
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.877
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.877
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.899
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.827
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.946
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.899
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.916
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.822
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.940
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.962
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.958
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.937
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.932
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.940
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.958
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.924
OBART04G20290 Oryza barthii OBART04G20290 I 0.940
OBART02G25970 Oryza barthii OBART02G25970 I 0.917
OB04G27270 Oryza brachyantha OB04G27270 I 0.942
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.932
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.962
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.940
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.924
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.954
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.917
OB02G33250 Oryza brachyantha OB02G33250 I 0.927
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.924
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.942
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.924
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.932
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.924
mgf018892m Mimulus guttatus mgf018892m N 0.845
F775_24861 Aegilops tauschii F775_24861 N 0.881