Pavir.Ib03751 (Panicum virgatum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Pavir.Ib03751 T250824_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK15172.1
M01263_2.00 		Cannabis sativa
NNNGTWAHWN
NWDTWACNNN		 PBM
Lambert et al.(2019)
pTH10125 		0.895 0.710
OS02G0104500
M02271_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH8719 		0.870 0.652
OS02G0104500
M02272_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH9273 		0.870 0.652
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib03751.1.p MADF 268 341
Pavir.Ib03751.2.p MADF 268 341

Links

Other MADF family TFs
Other Panicum virgatum TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MLOC_14207 Hordeum vulgare MLOC_14207 I 0.946
Traes_1AL_ED83D13D4 Triticum aestivum Traes_1AL_ED83D13D4 I 0.946
Traes_1DL_772D1D7DF Triticum aestivum Traes_1DL_772D1D7DF I 0.934
MDP0000122269 Malus domestica MDP0000122269 I 0.934
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.932
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.927
Pavir.Ga00673 Panicum virgatum Pavir.Ga00673 I 0.926
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.926
TRIUR3_29570 Triticum urartu TRIUR3_29570 I 0.926
Eucgr.D02541 Eucalyptus grandis Eucgr.D02541 I 0.924
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.923
evm.TU.supercontig_21.195 Carica papaya evm.TU.supercontig_21.195 I 0.922
PK14727.1 Cannabis sativa PK14727.1 I 0.921
ORGLA04G0173400 Oryza glaberrima ORGLA04G0173400 I 0.921
Bo6g083670 Brassica oleracea Bo6g083670 I 0.918
Lus10028584.g Linum usitatissimum Lus10028584.g I 0.916
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.913
LjSGA_034643.2 Lotus japonicus LjSGA_034643.2 I 0.912
BGIOSGA011584 Oryza indica BGIOSGA011584 I 0.903
GSMUA_Achr1G24120_001 Musa acuminata GSMUA_Achr1G24120_001 I 0.903
Pavir.J25029 Panicum virgatum Pavir.J25029 I 0.897
PK15172.1 Cannabis sativa PK15172.1 D 0.895
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.889
Traes_4DL_DC6A55EEE Triticum aestivum Traes_4DL_DC6A55EEE I 0.872
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.872
VIT_04s0008g01850 Vitis vinifera VIT_04s0008g01850 I 0.870
BGIOSGA007300 Oryza indica BGIOSGA007300 I 0.870
ONIVA02G00390 Oryza nivara ONIVA02G00390 I 0.870
ORGLA02G0003500 Oryza glaberrima ORGLA02G0003500 I 0.870
ORUFI02G00410 Oryza rufipogon ORUFI02G00410 I 0.870
OMERI02G09240 Oryza meridionalis OMERI02G09240 I 0.870
OGLUM02G00360 Oryza glumaepatula OGLUM02G00360 I 0.870
GRMZM2G111760 Zea mays GRMZM2G111760 I 0.870
OBART02G00380 Oryza barthii OBART02G00380 I 0.870
OS02G0104500 Oryza sativa OS02G0104500 D 0.870
OPUNC02G00050 Oryza punctata OPUNC02G00050 I 0.870
LjSGA_134698.1 Lotus japonicus LjSGA_134698.1 I 0.869
Aquca_023_00132 Aquilegia coerulea Aquca_023_00132 I 0.861
LPERR02G00380 Leersia perrieri LPERR02G00380 I 0.860
GRMZM2G037128 Zea mays GRMZM2G037128 I 0.855
Sb04g000520 Sorghum bicolor Sb04g000520 I 0.855
orange1.1g009174m.g Citrus sinensis orange1.1g009174m.g I 0.855
Pavir.Ab00054 Panicum virgatum Pavir.Ab00054 I 0.855
Ciclev10010595m.g Citrus clementina Ciclev10010595m.g I 0.855
Pavir.Aa03569 Panicum virgatum Pavir.Aa03569 I 0.855
GSMUA_Achr7G04610_001 Musa acuminata GSMUA_Achr7G04610_001 I 0.855
SELMODRAFT_14382 Selaginella moellendorffii SELMODRAFT_14382 I 0.848
SELMODRAFT_24518 Selaginella moellendorffii SELMODRAFT_24518 I 0.848
OB02G10400 Oryza brachyantha OB02G10400 I 0.845
29739.m003611 Ricinus communis 29739.m003611 I 0.842
POPTR_0310s00200 Populus trichocarpa POPTR_0310s00200 I 0.838
POPTR_0018s05520 Populus trichocarpa POPTR_0018s05520 I 0.838
SapurV1A.0435s0090 Salix purpurea SapurV1A.0435s0090 I 0.838
POPTR_0018s05540 Populus trichocarpa POPTR_0018s05540 I 0.838
cassava25125.valid.m1 Manihot esculenta cassava25125.valid.m1 I 0.831
GSMUA_AchrUn_randomG03020_001 Musa acuminata GSMUA_AchrUn_randomG03020_001 I 0.828
Gorai.010G096900 Gossypium raimondii Gorai.010G096900 I 0.828
POPTR_0006s23800 Populus trichocarpa POPTR_0006s23800 I 0.826
SapurV1A.0710s0040 Salix purpurea SapurV1A.0710s0040 I 0.826
TRIUR3_30093 Triticum urartu TRIUR3_30093 I 0.823
BRADI3G00697 Brachypodium distachyon BRADI3G00697 I 0.823
Traes_6AS_52AE4A6E2 Triticum aestivum Traes_6AS_52AE4A6E2 I 0.823
gene15385-v1.0-hybrid Fragaria vesca gene15385-v1.0-hybrid I 0.818
Si033157m.g Setaria italica Si033157m.g I 0.815
TCM_037381 Theobroma cacao TCM_037381 I 0.813