Pavir.J25029 (Panicum virgatum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Pavir.J25029 T250828_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK15172.1
M01263_2.00
Cannabis sativa
NNNGTWAHWN

NWDTWACNNN
PBM
Lambert et al.(2019)
pTH10125
0.931 0.646
OS02G0104500
M02271_2.00
Oryza sativa
NDGTAAWWHN

NDWWTTACHN
PBM
Weirauch et al.(2014)
pTH8719
0.849 0.519
OS02G0104500
M02272_2.00
Oryza sativa
NDGTAAWWHN

NDWWTTACHN
PBM
Weirauch et al.(2014)
pTH9273
0.849 0.519
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J25029.1.p MADF 227 309

Links

Other MADF family TFs
Other Panicum virgatum TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.953
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.952
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.946
Traes_4DL_DC6A55EEE Triticum aestivum Traes_4DL_DC6A55EEE I 0.938
Traes_1DL_772D1D7DF Triticum aestivum Traes_1DL_772D1D7DF I 0.935
MDP0000122269 Malus domestica MDP0000122269 I 0.935
PK14727.1 Cannabis sativa PK14727.1 I 0.935
MLOC_14207 Hordeum vulgare MLOC_14207 I 0.935
evm.TU.supercontig_21.195 Carica papaya evm.TU.supercontig_21.195 I 0.935
Traes_1AL_ED83D13D4 Triticum aestivum Traes_1AL_ED83D13D4 I 0.935
Bo6g083670 Brassica oleracea Bo6g083670 I 0.935
BGIOSGA011584 Oryza indica BGIOSGA011584 I 0.933
PK15172.1 Cannabis sativa PK15172.1 D 0.931
LjSGA_034643.2 Lotus japonicus LjSGA_034643.2 I 0.931
Pavir.Ga00673 Panicum virgatum Pavir.Ga00673 I 0.930
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.929
Lus10028584.g Linum usitatissimum Lus10028584.g I 0.929
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.927
Eucgr.D02541 Eucalyptus grandis Eucgr.D02541 I 0.926
ORGLA04G0173400 Oryza glaberrima ORGLA04G0173400 I 0.923
TRIUR3_29570 Triticum urartu TRIUR3_29570 I 0.913
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.913
Pavir.Ib03751 Panicum virgatum Pavir.Ib03751 I 0.897
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.893
Aquca_023_00132 Aquilegia coerulea Aquca_023_00132 I 0.892
VIT_04s0008g01850 Vitis vinifera VIT_04s0008g01850 I 0.877
Pavir.Aa03569 Panicum virgatum Pavir.Aa03569 I 0.864
GRMZM2G037128 Zea mays GRMZM2G037128 I 0.864
Pavir.Ab00054 Panicum virgatum Pavir.Ab00054 I 0.864
GSMUA_Achr7G04610_001 Musa acuminata GSMUA_Achr7G04610_001 I 0.864
orange1.1g009174m.g Citrus sinensis orange1.1g009174m.g I 0.864
Ciclev10010595m.g Citrus clementina Ciclev10010595m.g I 0.864
Sb04g000520 Sorghum bicolor Sb04g000520 I 0.864
OB02G10400 Oryza brachyantha OB02G10400 I 0.854
gene15385-v1.0-hybrid Fragaria vesca gene15385-v1.0-hybrid I 0.853
POPTR_0018s05520 Populus trichocarpa POPTR_0018s05520 I 0.852
POPTR_0310s00200 Populus trichocarpa POPTR_0310s00200 I 0.852
SapurV1A.0435s0090 Salix purpurea SapurV1A.0435s0090 I 0.852
POPTR_0018s05540 Populus trichocarpa POPTR_0018s05540 I 0.851
ONIVA02G00390 Oryza nivara ONIVA02G00390 I 0.849
OGLUM02G00360 Oryza glumaepatula OGLUM02G00360 I 0.849
OBART02G00380 Oryza barthii OBART02G00380 I 0.849
OMERI02G09240 Oryza meridionalis OMERI02G09240 I 0.849
ORGLA02G0003500 Oryza glaberrima ORGLA02G0003500 I 0.849
BGIOSGA007300 Oryza indica BGIOSGA007300 I 0.849
OPUNC02G00050 Oryza punctata OPUNC02G00050 I 0.849
OS02G0104500 Oryza sativa OS02G0104500 D 0.849
GRMZM2G111760 Zea mays GRMZM2G111760 I 0.849
ORUFI02G00410 Oryza rufipogon ORUFI02G00410 I 0.849
SapurV1A.0710s0040 Salix purpurea SapurV1A.0710s0040 I 0.841
cassava25125.valid.m1 Manihot esculenta cassava25125.valid.m1 I 0.841
POPTR_0006s23800 Populus trichocarpa POPTR_0006s23800 I 0.841
LPERR02G00380 Leersia perrieri LPERR02G00380 I 0.839
29739.m003611 Ricinus communis 29739.m003611 I 0.835
Si033157m.g Setaria italica Si033157m.g I 0.825
GSMUA_AchrUn_randomG03020_001 Musa acuminata GSMUA_AchrUn_randomG03020_001 I 0.821
TRIUR3_30093 Triticum urartu TRIUR3_30093 I 0.816
Traes_6AS_52AE4A6E2 Triticum aestivum Traes_6AS_52AE4A6E2 I 0.816
BRADI3G00697 Brachypodium distachyon BRADI3G00697 I 0.816