CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10007959m.g
(
Eutrema salsugineum
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF10545 (MADF_DNA_bdg)
IPR006578
Thhalv10007959m.g
T250870_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GT-1
M02274_2.00
Arabidopsis lyrata
GGTTAACC
GGTTAACC
PBM
Weirauch et al.(2014)
pTH9235
0.968
0.771
GT-1
M02263_2.00
Arabidopsis thaliana
KTTAACCM
KGGTTAAM
PBM
Weirauch et al.(2014)
pTH8149
0.964
0.771
GT-1
M10896_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_02
0.964
0.771
GT-1
M10897_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6
0.964
0.771
MDP0000164819
M02280_2.00
Malus domestica
YTAACYVNNN
NNNBRGTTAR
PBM
Weirauch et al.(2014)
pTH9204
0.962
0.800
MTR_3g085960
M02270_2.00
Medicago truncatula
NWAACYNNNN
NNNNRGTTWN
PBM
Weirauch et al.(2014)
pTH9208
0.961
0.629
OS04G0486400
M02273_2.00
Oryza sativa
YTAACYNNNN
NNNNRGTTAR
PBM
Weirauch et al.(2014)
pTH9338
0.945
0.757
GT-4
M02265_2.00
Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN
PBM
Weirauch et al.(2014)
pTH7910
0.944
0.657
GT-4
M06974_2.00
Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT
Dap-seq
OMalley et al.(2016)
AT3G25990_col_a
0.944
0.657
GT-4
M06975_2.00
Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW
Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a
0.944
0.657
cassava13991.valid.m1
M02279_2.00
Manihot esculenta
NNDACHNNNN
NNNNDGTHNN
PBM
Weirauch et al.(2014)
pTH9206
0.941
0.771
GLYMA11G37390
M02269_2.00
Glycine max
BWDACYNNNN
NNNNRGTHWV
PBM
Weirauch et al.(2014)
pTH9183
0.939
0.614
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00
Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN
PBM
Weirauch et al.(2014)
pTH9228
0.930
0.686
PK20543.1
M01264_2.00
Cannabis sativa
YTAACYNNNN
NNNNRGTTAR
PBM
Lambert et al.(2019)
pTH11253
0.913
0.743
29929.m004704
M02278_2.00
Ricinus communis
NDNDHDHNHN
NDNDHDHNHN
PBM
Weirauch et al.(2014)
pTH9339
0.908
0.714
VIT_17s0000g10420
M02275_2.00
Vitis vinifera
GTTAACYV
BRGTTAAC
PBM
Weirauch et al.(2014)
pTH9293
0.886
0.471
For this family, TFs with SR scores >
0.812
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10007959m
MADF
94
176
MFRRGMDGLFNTSKSNKHLWEQISAKMRDKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGNGSAKMSYYKEIEDILRERSKKAS
Links
Other
MADF
family TFs
Other
Eutrema salsugineum
TFs
68 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy