Thhalv10011582m.g (Eutrema salsugineum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Thhalv10011582m.g T250871_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ASIL1
M02264_2.00
Arabidopsis thaliana
NNDHCGDHNN

NNDHCGDHNN
PBM
Weirauch et al.(2014)
pTH7464
0.952 0.829
ASIL2
M06973_2.00
Arabidopsis thaliana
TCRCCGGARAH

DTYTCCGGYGA
Dap-seq
OMalley et al.(2016)
At3g14180_col
0.817 0.643
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10011582m MADF 99 174

Links

Other MADF family TFs
Other Eutrema salsugineum TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ASIL1 Arabidopsis thaliana AT1G54060 D 0.952
ASIL2 Arabidopsis thaliana AT3G14180 D 0.817
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.841
Carubv10009310m.g Capsella rubella Carubv10009310m.g I 0.960
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.817
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.884
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.964
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.817
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.891
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.829
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.849
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.817
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.867
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.817
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.820
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.830
MDP0000281471 Malus domestica MDP0000281471 I 0.821
MDP0000255104 Malus domestica MDP0000255104 I 0.821
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.814
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.831
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.830
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.845
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.849
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.817
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.964
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.881
Bra037960 Brassica rapa Bra037960 I 0.955
Bra014370 Brassica rapa Bra014370 I 0.970
Bo6g050870 Brassica oleracea Bo6g050870 I 0.964
Bo6g033010 Brassica oleracea Bo6g033010 I 0.961
Bo3g184450 Brassica oleracea Bo3g184450 I 0.955
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.831
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.862
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.814
29727.m000472 Ricinus communis 29727.m000472 I 0.849
Cla015773 Citrullus lanatus Cla015773 I 0.829
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I 0.960
TCM_029209 Theobroma cacao TCM_029209 I 0.849
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.847
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.846
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.835
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N 0.824
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N 0.825
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N 0.825
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N 0.825
PK22475.1 Cannabis sativa PK22475.1 N 0.815