PK20543.1 (Cannabis sativa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 PK20543.1 T251175_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20543.1
M01264_2.00		 Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.947 0.691
29929.m004704
M02278_2.00 		Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339 		0.947 0.706
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.945 0.632
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.941 0.544
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.920 0.676
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.920 0.676
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.920 0.676
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.919 0.691
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.912 0.647
MTR_3g085960
M02270_2.00 		Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208 		0.910 0.588
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.907 0.647
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.899 0.588
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.899 0.588
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.899 0.588
VIT_17s0000g10420
M02275_2.00 		Vitis vinifera
GTTAACYV
BRGTTAAC		 PBM
Weirauch et al.(2014)
pTH9293 		0.823 0.426
For this family, TFs with SR scores > 0.812 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01264_2.00 MADF 53 123

DNA Binding Domains

Protein ID Domain From To Sequence
PK20543.1 MADF 110 180

Links

Other MADF family TFs
Other Cannabis sativa TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.960
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.957
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.955
TCM_010751 Theobroma cacao TCM_010751 I 0.953
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.953
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.953
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.952
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.951
Pm016214 Prunus mume Pm016214 I 0.951
MDP0000275412 Malus domestica MDP0000275412 I 0.948
29929.m004704 Ricinus communis 29929.m004704 D 0.947
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.947
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.947
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.947
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.947
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.945
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.945
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.942
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.941
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.941
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.941
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.941
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.941
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.941
Ca_11315 Cicer arietinum Ca_11315 I 0.941
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.941
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.940
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.940
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.940
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.938
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.938
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.937
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.936
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.933
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.931
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.926
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.925
GT-1 Arabidopsis thaliana AT1G13450 D 0.921
Bra026903 Brassica rapa Bra026903 I 0.920
Bo8g107400 Brassica oleracea Bo8g107400 I 0.920
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.920
MDP0000164819 Malus domestica MDP0000164819 D 0.919
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.919
Pm006885 Prunus mume Pm006885 I 0.919
Si010147m.g Setaria italica Si010147m.g I 0.916
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.915
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.913
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.913
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.913
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.913
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.912
OB04G23970 Oryza brachyantha OB04G23970 I 0.911
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.911
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.910
Cla023054 Citrullus lanatus Cla023054 I 0.910
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.910
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.910
OS04G0486400 Oryza sativa OS04G0486400 D 0.907
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.907
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.907
Si036121m.g Setaria italica Si036121m.g I 0.906
mgf016368m Mimulus guttatus mgf016368m I 0.903
GT-4 Arabidopsis thaliana AT3G25990 D 0.899
Bo5g017510 Brassica oleracea Bo5g017510 I 0.896
Bra019721 Brassica rapa Bra019721 I 0.896
Bo2g138840 Brassica oleracea Bo2g138840 I 0.893
Bra036354 Brassica rapa Bra036354 I 0.893
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.823