CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
PK24122.1
(
Cannabis sativa
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF10545 (MADF_DNA_bdg)
IPR006578
PK24122.1
T251177_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT-GTL1
M06968_2.00
Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_col_a
0.848
0.688
AT-GTL1
M06969_2.00
Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_colamp_a
0.848
0.688
AT1G76880
M06970_2.00
Arabidopsis thaliana
RHRGTAAAAWNDDDWW
WWHHHNWTTTTACYDY
Dap-seq
OMalley et al.(2016)
AT1G76880_col_a
0.834
0.746
For this family, TFs with SR scores >
0.812
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK24122.1
MADF
110
180
EMDVAFRDASVKGPLWDDVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKDGRTGKSDGKTYRFFDQLEAL
PK24122.1
MADF
544
617
TNLDSKYQENGPKGPLWEEISSAMKKLGYNRNPKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALY
Links
Other
MADF
family TFs
Other
Cannabis sativa
TFs
190 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy