LjSGA_058481.1 (Lotus japonicus)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 LjSGA_058481.1 T251216_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G58630
M06976_2.00
Arabidopsis thaliana
HNTCGCCGGARWHDN

NHDWYTCCGGCGAND
Dap-seq
OMalley et al.(2016)
AT3G58630_col_a
0.877 0.658
AT3G58630
M06977_2.00
Arabidopsis thaliana
NNTCGCCGGARWHDN

NHDWYTCCGGCGANN
Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a
0.877 0.658
ASIL2
M06973_2.00
Arabidopsis thaliana
TCRCCGGARAH

DTYTCCGGYGA
Dap-seq
OMalley et al.(2016)
At3g14180_col
0.815 0.603
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_058481.1 MADF 65 145

Links

Other MADF family TFs
Other Lotus japonicus TFs

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ca_19877 Cicer arietinum Ca_19877 I 0.940
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.934
29900.m001628 Ricinus communis 29900.m001628 I 0.934
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.928
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.927
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.926
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.925
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.918
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.918
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.918
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.911
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.911
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.909
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.904
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.904
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.902
Ca_00394 Cicer arietinum Ca_00394 I 0.902
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.902
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.901
TCM_029695 Theobroma cacao TCM_029695 I 0.901
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.896
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.896
MDP0000301451 Malus domestica MDP0000301451 I 0.894
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.892
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.891
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.891
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.886
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.885
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.885
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.885
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.885
Cla019967 Citrullus lanatus Cla019967 I 0.885
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.885
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.884
Cla009854 Citrullus lanatus Cla009854 I 0.883
Cla002288 Citrullus lanatus Cla002288 I 0.882
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.880
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.879
mgf006505m Mimulus guttatus mgf006505m I 0.878
Bra003346 Brassica rapa Bra003346 I 0.877
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.877
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.877
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.877
Bo6g075950 Brassica oleracea Bo6g075950 I 0.877
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.877
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.877
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.877
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.877
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.877
OS05G0560600 Oryza sativa OS05G0560600 I 0.877
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.877
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.877
OBART05G25610 Oryza barthii OBART05G25610 I 0.877
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.877
Si022565m.g Setaria italica Si022565m.g I 0.876
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.876
PK27986.1 Cannabis sativa PK27986.1 I 0.876
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.876
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.876
Pavir.J33948 Panicum virgatum Pavir.J33948 I 0.876
Ca_02494 Cicer arietinum Ca_02494 N 0.876
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.875
Lus10025404.g Linum usitatissimum Lus10025404.g I 0.869
Lus10025406.g Linum usitatissimum Lus10025406.g N 0.869
Lus10015282.g Linum usitatissimum Lus10015282.g I 0.869
TCM_042467 Theobroma cacao TCM_042467 N 0.868
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.865
mgf001239m Mimulus guttatus mgf001239m N 0.865
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.864
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.863
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.855
mgf000047m Mimulus guttatus mgf000047m I 0.854
29814.m000741 Ricinus communis 29814.m000741 I 0.854
Cucsa.195790 Cucumis sativus Cucsa.195790 N 0.854
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.853
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.853
Lus10007273.g Linum usitatissimum Lus10007273.g N 0.851
SELMODRAFT_68041 Selaginella moellendorffii SELMODRAFT_68041 I 0.851
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.851
SELMODRAFT_68039 Selaginella moellendorffii SELMODRAFT_68039 I 0.851
BRADI2G16780 Brachypodium distachyon BRADI2G16780 I 0.850
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.841
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.841
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.828
Bra007407 Brassica rapa Bra007407 I 0.827
TRAES3BF009800030CFD_g Triticum aestivum TRAES3BF009800030CFD_g N 0.826
GRMZM2G023119 Zea mays GRMZM2G023119 N 0.826
BRADI2G46320 Brachypodium distachyon BRADI2G46320 N 0.826
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.822
AMTR_s00021p00065350 Amborella trichopoda AMTR_s00021p00065350 I 0.817
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.815
ASIL2 Arabidopsis thaliana AT3G14180 D 0.815
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.815
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.815
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.815
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.815