CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LjSGA_058481.1
(
Lotus japonicus
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF10545 (MADF_DNA_bdg)
IPR006578
LjSGA_058481.1
T251216_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT3G58630
M06976_2.00
Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND
Dap-seq
OMalley et al.(2016)
AT3G58630_col_a
0.877
0.658
AT3G58630
M06977_2.00
Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN
Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a
0.877
0.658
ASIL2
M06973_2.00
Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA
Dap-seq
OMalley et al.(2016)
At3g14180_col
0.815
0.603
For this family, TFs with SR scores >
0.812
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjSGA_058481.1
MADF
65
145
AWGERYLELNSGSLRQKHWQEVADTVNDRHAGSKKSRRTDVQCKNRIDTLKKKYKIEKARVSESGGGYRSLWPFFSRLNAL
Links
Other
MADF
family TFs
Other
Lotus japonicus
TFs
96 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ca_19877
Cicer arietinum
Ca_19877
I
0.940
cassava2218.valid.m1
Manihot esculenta
cassava2218.valid.m1
I
0.934
29900.m001628
Ricinus communis
29900.m001628
I
0.934
cassava21220.m1
Manihot esculenta
cassava21220.m1
I
0.928
VIT_10s0003g01300
Vitis vinifera
VIT_10s0003g01300
I
0.927
GSMUA_Achr9G06410_001
Musa acuminata
GSMUA_Achr9G06410_001
I
0.926
VIT_12s0028g02150
Vitis vinifera
VIT_12s0028g02150
I
0.925
evm.TU.supercontig_209.41
Carica papaya
evm.TU.supercontig_209.41
I
0.918
MTR_4g079960
Medicago truncatula
MTR_4g079960
I
0.918
GSMUA_Achr6G26840_001
Musa acuminata
GSMUA_Achr6G26840_001
I
0.918
Solyc12g010890.1
Solanum lycopersicum
Solyc12g010890.1
I
0.911
PGSC0003DMG400007806
Solanum tuberosum
PGSC0003DMG400007806
I
0.911
evm.TU.supercontig_7.72
Carica papaya
evm.TU.supercontig_7.72
I
0.909
GSMUA_Achr1G27460_001
Musa acuminata
GSMUA_Achr1G27460_001
I
0.904
POPTR_0001s08350
Populus trichocarpa
POPTR_0001s08350
I
0.904
GLYMA13G30280
Glycine max
GLYMA13G30280
I
0.902
Ca_00394
Cicer arietinum
Ca_00394
I
0.902
GLYMA15G08890
Glycine max
GLYMA15G08890
I
0.902
Gorai.011G039600
Gossypium raimondii
Gorai.011G039600
I
0.901
TCM_029695
Theobroma cacao
TCM_029695
I
0.901
GSMUA_Achr1G11500_001
Musa acuminata
GSMUA_Achr1G11500_001
I
0.896
GSMUA_Achr5G09160_001
Musa acuminata
GSMUA_Achr5G09160_001
I
0.896
MDP0000301451
Malus domestica
MDP0000301451
I
0.894
SapurV1A.0260s0280
Salix purpurea
SapurV1A.0260s0280
I
0.892
PRUPE_ppa009171mg
Prunus persica
PRUPE_ppa009171mg
I
0.891
GLYMA13G36650
Glycine max
GLYMA13G36650
I
0.891
PRUPE_ppa008833mg
Prunus persica
PRUPE_ppa008833mg
I
0.886
Ciclev10016016m.g
Citrus clementina
Ciclev10016016m.g
I
0.885
orange1.1g021525m.g
Citrus sinensis
orange1.1g021525m.g
I
0.885
Cucsa.213110
Cucumis sativus
Cucsa.213110
I
0.885
Cucsa.213120
Cucumis sativus
Cucsa.213120
I
0.885
Cla019967
Citrullus lanatus
Cla019967
I
0.885
Aquca_021_00219
Aquilegia coerulea
Aquca_021_00219
I
0.885
gene29666-v1.0-hybrid
Fragaria vesca
gene29666-v1.0-hybrid
I
0.884
Cla009854
Citrullus lanatus
Cla009854
I
0.883
Cla002288
Citrullus lanatus
Cla002288
I
0.882
GLYMA12G33850
Glycine max
GLYMA12G33850
I
0.880
Thhalv10006105m.g
Eutrema salsugineum
Thhalv10006105m.g
I
0.879
mgf006505m
Mimulus guttatus
mgf006505m
I
0.878
Bra003346
Brassica rapa
Bra003346
I
0.877
Bostr.20903s0103
Boechera stricta
Bostr.20903s0103
I
0.877
OGLUM05G27260
Oryza glumaepatula
OGLUM05G27260
I
0.877
Cagra.0686s0075
Capsella grandiflora
Cagra.0686s0075
I
0.877
Bo6g075950
Brassica oleracea
Bo6g075950
I
0.877
ORGLA05G0221200
Oryza glaberrima
ORGLA05G0221200
I
0.877
BGIOSGA020349
Oryza indica
BGIOSGA020349
I
0.877
ONIVA05G26860
Oryza nivara
ONIVA05G26860
I
0.877
OMERI02G35600
Oryza meridionalis
OMERI02G35600
I
0.877
ORUFI05G27490
Oryza rufipogon
ORUFI05G27490
I
0.877
OS05G0560600
Oryza sativa
OS05G0560600
I
0.877
BGIOSGA020351
Oryza indica
BGIOSGA020351
I
0.877
Carubv10017646m.g
Capsella rubella
Carubv10017646m.g
I
0.877
OBART05G25610
Oryza barthii
OBART05G25610
I
0.877
AT3G58630
Arabidopsis thaliana
AT3G58630
D
0.877
Si022565m.g
Setaria italica
Si022565m.g
I
0.876
GRMZM2G157219
Zea mays
GRMZM2G157219
I
0.876
PK27986.1
Cannabis sativa
PK27986.1
I
0.876
Sb09g028350
Sorghum bicolor
Sb09g028350
I
0.876
Pavir.J11649
Panicum virgatum
Pavir.J11649
I
0.876
Pavir.J33948
Panicum virgatum
Pavir.J33948
I
0.876
Ca_02494
Cicer arietinum
Ca_02494
N
0.876
fgenesh2_kg.5__2307__AT3G58630.1
Arabidopsis lyrata
fgenesh2_kg.5__2307__AT3G58630.1
I
0.875
Lus10025404.g
Linum usitatissimum
Lus10025404.g
I
0.869
Lus10025406.g
Linum usitatissimum
Lus10025406.g
N
0.869
Lus10015282.g
Linum usitatissimum
Lus10015282.g
I
0.869
TCM_042467
Theobroma cacao
TCM_042467
N
0.868
OPUNC05G23220
Oryza punctata
OPUNC05G23220
I
0.865
mgf001239m
Mimulus guttatus
mgf001239m
N
0.865
MTR_2g016140
Medicago truncatula
MTR_2g016140
I
0.864
VIT_08s0058g00200
Vitis vinifera
VIT_08s0058g00200
I
0.863
GSMUA_Achr9G04510_001
Musa acuminata
GSMUA_Achr9G04510_001
I
0.855
mgf000047m
Mimulus guttatus
mgf000047m
I
0.854
29814.m000741
Ricinus communis
29814.m000741
I
0.854
Cucsa.195790
Cucumis sativus
Cucsa.195790
N
0.854
SapurV1A.0650s0110
Salix purpurea
SapurV1A.0650s0110
I
0.853
POPTR_0008s07140
Populus trichocarpa
POPTR_0008s07140
I
0.853
Lus10007273.g
Linum usitatissimum
Lus10007273.g
N
0.851
SELMODRAFT_68041
Selaginella moellendorffii
SELMODRAFT_68041
I
0.851
POPTR_0003s11850
Populus trichocarpa
POPTR_0003s11850
I
0.851
SELMODRAFT_68039
Selaginella moellendorffii
SELMODRAFT_68039
I
0.851
BRADI2G16780
Brachypodium distachyon
BRADI2G16780
I
0.850
orange1.1g024563m.g
Citrus sinensis
orange1.1g024563m.g
I
0.841
Ciclev10033792m.g
Citrus clementina
Ciclev10033792m.g
I
0.841
gene21007-v1.0-hybrid
Fragaria vesca
gene21007-v1.0-hybrid
N
0.828
Bra007407
Brassica rapa
Bra007407
I
0.827
TRAES3BF009800030CFD_g
Triticum aestivum
TRAES3BF009800030CFD_g
N
0.826
GRMZM2G023119
Zea mays
GRMZM2G023119
N
0.826
BRADI2G46320
Brachypodium distachyon
BRADI2G46320
N
0.826
Gorai.010G235700
Gossypium raimondii
Gorai.010G235700
I
0.822
AMTR_s00021p00065350
Amborella trichopoda
AMTR_s00021p00065350
I
0.817
Thhalv10020691m.g
Eutrema salsugineum
Thhalv10020691m.g
I
0.815
ASIL2
Arabidopsis thaliana
AT3G14180
D
0.815
Carubv10015321m.g
Capsella rubella
Carubv10015321m.g
I
0.815
fgenesh2_kg.3__1533__AT3G14180.1
Arabidopsis lyrata
fgenesh2_kg.3__1533__AT3G14180.1
I
0.815
Cagra.3631s0005
Capsella grandiflora
Cagra.3631s0005
I
0.815
Bostr.28625s0287
Boechera stricta
Bostr.28625s0287
I
0.815