CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NBR_0000280301
(
Nippostrongylus brasiliensis
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF10545 (MADF_DNA_bdg)
IPR006578
NBR_0000280301
T252325_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
madf-9
M02277_2.00
Caenorhabditis elegans
VYGCGGAH
DTCCGCRB
PBM
Weirauch et al.(2014)
pTH8333
0.857
0.642
CBG08311
M02267_2.00
Caenorhabditis briggsae
RCGCGGAM
KTCCGCGY
PBM
Weirauch et al.(2014)
pTH9393
0.854
0.630
For this family, TFs with SR scores >
0.812
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
NBR_0000280301-mRNA-1
MADF
11
99
LIAEVKARRYLYDHTDEGYNLIPWRNNAWVEIVTVDVAENIAAKFGNKTSEHVKTRWKTLRDRFKKEEKKEKVTGKPATWVFQKPLRFI
Links
Other
MADF
family TFs
Other
Nippostrongylus brasiliensis
TFs
19 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CGOC_0001115201
Cylicostephanus goldi
CGOC_0001115201
I
0.909
ACOC_0000053701
Angiostrongylus costaricensis
ACOC_0000053701
I
0.904
DICVIV_09254
Dictyocaulus viviparus
DICVIV_09254
I
0.903
HCOI00362100
Haemonchus contortus
HCOI00362100
I
0.902
HPBE_0002310201
Heligmosomoides bakeri
HPBE_0002310201
I
0.902
TELCIR_18230
Teladorsagia circumcincta
TELCIR_18230
I
0.902
HPLM_0002104601
Haemonchus placei
HPLM_0002104601
I
0.902
HCOI01732900
Haemonchus contortus
HCOI01732900
I
0.902
ANCDUO_21217
Ancylostoma duodenale
ANCDUO_21217
I
0.902
ANCDUO_20588
Ancylostoma duodenale
ANCDUO_20588
I
0.902
OESDEN_17440
Oesophagostomum dentatum
OESDEN_17440
I
0.901
OESDEN_02601
Oesophagostomum dentatum
OESDEN_02601
I
0.901
ANCCAN_19661
Ancylostoma caninum
ANCCAN_19661
I
0.890
CBN17693
Caenorhabditis brenneri
CBN17693
I
0.857
madf-9
Caenorhabditis elegans
WBGene00022608
D
0.857
CBN03210
Caenorhabditis brenneri
CBN03210
I
0.857
CRE11120
Caenorhabditis remanei
CRE11120
I
0.854
CBG08311
Caenorhabditis briggsae
CBG08311
D
0.854
CJA11982
Caenorhabditis japonica
CJA11982
I
0.854