CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NBR_0000280301
(
Nippostrongylus brasiliensis
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF10545 (MADF_DNA_bdg)
IPR006578
NBR_0000280301
T252325_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
madf-9
M02277_2.00
Caenorhabditis elegans
VYGCGGAH
DTCCGCRB
PBM
Weirauch et al.(2014)
pTH8333
0.857
0.642
CBG08311
M02267_2.00
Caenorhabditis briggsae
RCGCGGAM
KTCCGCGY
PBM
Weirauch et al.(2014)
pTH9393
0.854
0.630
For this family, TFs with SR scores >
0.812
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
NBR_0000280301-mRNA-1
MADF
11
99
LIAEVKARRYLYDHTDEGYNLIPWRNNAWVEIVTVDVAENIAAKFGNKTSEHVKTRWKTLRDRFKKEEKKEKVTGKPATWVFQKPLRFI
Links
Other
MADF
family TFs
Other
Nippostrongylus brasiliensis
TFs
19 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy