scaffold190-EXSNAP2012.38 (Pristionchus exspectatus)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 scaffold190-EXSNAP2012.38 T252529_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CBG08311
M02267_2.00
Caenorhabditis briggsae
RCGCGGAM

KTCCGCGY
PBM
Weirauch et al.(2014)
pTH9393
0.885 0.512
madf-9
M02277_2.00
Caenorhabditis elegans
VYGCGGAH

DTCCGCRB
PBM
Weirauch et al.(2014)
pTH8333
0.880 0.500
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold190-EXSNAP2012.38 MADF 84 163

Links

Other MADF family TFs
Other Pristionchus exspectatus TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CBG08311 Caenorhabditis briggsae CBG08311 D 0.885
CRE11120 Caenorhabditis remanei CRE11120 I 0.880
CJA11982 Caenorhabditis japonica CJA11982 I 0.880
madf-9 Caenorhabditis elegans WBGene00022608 D 0.880
CBN03210 Caenorhabditis brenneri CBN03210 I 0.880
CBN17693 Caenorhabditis brenneri CBN17693 I 0.880
HPLM_0002104601 Haemonchus placei HPLM_0002104601 I 0.843
HPBE_0002310201 Heligmosomoides bakeri HPBE_0002310201 I 0.843
OESDEN_02601 Oesophagostomum dentatum OESDEN_02601 I 0.843
OESDEN_17440 Oesophagostomum dentatum OESDEN_17440 I 0.843
HCOI01732900 Haemonchus contortus HCOI01732900 I 0.843
TELCIR_18230 Teladorsagia circumcincta TELCIR_18230 I 0.843
ANCDUO_20588 Ancylostoma duodenale ANCDUO_20588 I 0.843
ACOC_0000053701 Angiostrongylus costaricensis ACOC_0000053701 I 0.843
HCOI00362100 Haemonchus contortus HCOI00362100 I 0.843
ANCDUO_21217 Ancylostoma duodenale ANCDUO_21217 I 0.843
DICVIV_09254 Dictyocaulus viviparus DICVIV_09254 I 0.843
ANCCAN_19661 Ancylostoma caninum ANCCAN_19661 I 0.841