CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AMSG_06825
(
Thecamonas trahens
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
AMSG_06825
T252691_2.00
Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
unc-120
M00684_2.00
Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG
PBM
Narasimhan et al.(2015)
pTH10822
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AMSG_06825T0
MADS box
139
186
YIENKNKRHISFFKRKRGIMKKALELATLTGSQVMLVIASETGHLYTY
Links
Other
MADS box
family TFs
Other
Thecamonas trahens
TFs
33 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy