CpipJ_CPIJ008335 (Culex pipiens)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 CpipJ_CPIJ008335 T252703_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.788 0.788
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.788 0.788
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.758 0.758
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.758 0.758
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.758 0.758
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.758 0.758
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.758 0.758
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.758 0.758
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.758 0.758
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.758 0.758
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.758 0.758
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.758 0.758
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.758 0.758
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.758 0.758
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.758 0.758
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.758 0.758
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.758 0.758
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.758 0.758
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.758 0.758
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.758 0.758
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.758 0.758
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.758 0.758
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.758 0.758
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.758 0.758
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.758 0.758
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ008335-RA MADS box 44 76

Links

Other MADS box family TFs
Other Culex pipiens TFs

160 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CPIJ008335 Culex quinquefasciatus CPIJ008335 I 1.000
ASIS007770 Anopheles sinensis ASIS007770 I 0.963
MESCA001358 Megaselia scalaris MESCA001358 I 0.963
SINV23954 Solenopsis invicta SINV23954 I 0.963
AFUN006147 Anopheles funestus AFUN006147 I 0.963
ASTEI07120 Anopheles stephensi ASTEI07120 I 0.963
ADAC008363 Anopheles darlingi ADAC008363 I 0.963
ACHR000964 Anopheles christyi ACHR000964 I 0.963
SRF Gorilla gorilla ENSGGOG00000006293 I 0.962
ENSOPRG00000002509 Ochotona princeps ENSOPRG00000002509 I 0.962
SRF Vicugna pacos ENSVPAG00000008912 I 0.962
ENSGMOG00000001540 Gadus morhua ENSGMOG00000001540 I 0.962
Brh_R011000 Buceros rhinoceros Brh_R011000 I 0.962
CLEC013390 Cimex lectularius CLEC013390 I 0.929
MCINX015635 Melitaea cinxia MCINX015635 I 0.929
TELCIR_12851 Teladorsagia circumcincta TELCIR_12851 I 0.926
BGIBMGA001384 Bombyx mori BGIBMGA001384 I 0.897
Hba_21368 Heterorhabditis bacteriophora Hba_21368 I 0.893
SRF Erinaceus europaeus ENSEEUG00000005614 I 0.885
SRF Sorex araneus ENSSARG00000003401 I 0.885
ENSP00000265354 Macaca fascicularis ENSP00000265354 I 0.867
LLOJ005985 Lutzomyia longipalpis LLOJ005985 I 0.867
ASIS013674 Anopheles sinensis ASIS013674 N 0.848
Ogr17973 Ophisaurus gracilis Ogr17973 I 0.839
AARA006325 Anopheles arabiensis AARA006325 I 0.818
AALB009948 Anopheles albimanus AALB009948 I 0.818
HHAL001485-PA Halyomorpha halys HHAL001485-PA I 0.818
ACUA004576 Anopheles culicifacies ACUA004576 I 0.818
RO3G_07165 Rhizopus oryzae RO3G_07165 I 0.793
Ppa-unc-120 Pristionchus pacificus PPA14131 I 0.788
L798_08800 Zootermopsis nevadensis L798_08800 I 0.788
LotgiG59850 Lottia gigantea LotgiG59850 I 0.788
NV18787 Nasonia vitripennis NV18787 I 0.788
GE14398 Drosophila yakuba FBgn0232006 I 0.788
GH20989 Drosophila grimshawi FBgn0128451 I 0.788
GI21322 Drosophila mojavensis FBgn0144052 I 0.788
GG22961 Drosophila erecta FBgn0115118 I 0.788
GF11392 Drosophila ananassae FBgn0088432 I 0.788
GA17433 Drosophila pseudoobscura FBgn0077446 I 0.788
GL20046 Drosophila persimilis FBgn0157643 I 0.788
GM11854 Drosophila sechellia FBgn0166795 I 0.788
GB47234 Apis mellifera GB47234 I 0.788
HMEL017830 Heliconius melpomene HMEL017830 I 0.788
GK22205 Drosophila willistoni FBgn0224190 I 0.788
GJ21595 Drosophila virilis FBgn0208714 I 0.788
GD11852 Drosophila simulans FBgn0183591 I 0.788
ISCW019966 Ixodes scapularis ISCW019966 I 0.788
fgenesh2_pg.scaffold_8000100 Branchiostoma floridae fgenesh2_pg.scaffold_8000100 I 0.788
BGLB003854 Biomphalaria glabrata BGLB003854 I 0.788
MDOA002443 Musca domestica MDOA002443 I 0.788
AQUA001308 Anopheles quadriannulatus AQUA001308 I 0.788
AMIN001258 Anopheles minimus AMIN001258 I 0.788
AFAF013563 Anopheles farauti AFAF013563 I 0.788
D917_02561 Trichinella nativa D917_02561 I 0.788
D918_07967 Trichuris suis D918_07967 I 0.788
TTRE_0000468501 Trichuris trichiura TTRE_0000468501 I 0.788
TMUE_s0092001100 Trichuris muris TMUE_s0092001100 I 0.788
scaffold690-EXSNAP2012.12 Pristionchus exspectatus scaffold690-EXSNAP2012.12 I 0.788
SBAD_0000850501 Soboliphyme baturini SBAD_0000850501 I 0.788
AEPI007010 Anopheles epiroticus AEPI007010 I 0.788
ADIR000346 Anopheles dirus ADIR000346 I 0.788
Hsal_11632--XP_001120126.1_APIME Harpegnathos saltator Hsal_11632--XP_001120126.1_APIME I 0.788
Cflo_11261--XP_001120126.1_APIME Camponotus floridanus Cflo_11261--XP_001120126.1_APIME I 0.788
TC004911 Tribolium castaneum TC004911 I 0.788
SPU_027774 Strongylocentrotus purpuratus SPU_027774 I 0.788
Myotis_brandtii_SRF_10026135 Myotis brandtii Myotis_brandtii_SRF_10026135 I 0.788
fgenesh2_pg.scaffold_196000035 Branchiostoma floridae fgenesh2_pg.scaffold_196000035 I 0.788
ACOM041693 Anopheles coluzzii ACOM041693 I 0.788
AATE011966 Anopheles atroparvus AATE011966 I 0.788
LCUP011663 Lucilia cuprina LCUP011663 I 0.788
Sakowv30019106m.g Saccoglossus kowalevskii Sakowv30019106m.g I 0.788
SMAR003014 Strigamia maritima SMAR003014 I 0.788
bs Drosophila melanogaster FBgn0004101 D 0.788
CapteG221100 Capitella teleta CapteG221100 I 0.788
AGAP010512 Anopheles gambiae AGAP010512 I 0.788
CGI_10019446 Crassostrea gigas CGI_10019446 I 0.788
DAPPUDRAFT_8703 Daphnia pulex DAPPUDRAFT_8703 I 0.788
EFV60876 Trichinella spiralis EFV60876 I 0.788
ACEP12187 Atta cephalotes ACEP12187 I 0.788
ACYPI002973 Acyrthosiphon pisum ACYPI002973 I 0.788
AAEL010926 Aedes aegypti AAEL010926 I 0.788
AAEL008720 Aedes aegypti AAEL008720 I 0.788
SNOG_07763 Stagonospora nodorum SNOG_07763 I 0.759
AWRI1499_3592 Brettanomyces bruxellensis AWRI1499_3592 I 0.759
SNOG_07764 Phaeosphaeria nodorum SNOG_07764 I 0.759
fgenesh1_kg.C_scaffold_2000029 Cochliobolus heterostrophus C5 fgenesh1_kg.C_scaffold_2000029 I 0.759
srfb Danio rerio ENSDARG00000102867 I 0.758
srfa Danio rerio ENSDARG00000053918 I 0.758
ENSCSAVG00000008682 Ciona savignyi ENSCSAVG00000008682 I 0.758
srf.L Xenopus laevis XB-GENE-864819 I 0.758
SRF Dasypus novemcinctus ENSDNOG00000014133 I 0.758
srf Xenopus tropicalis XB-GENE-482036 I 0.758
SRF Felis catus ENSFCAG00000025180 I 0.758
Pvit_03053 Pogona vitticeps Pvit_03053 I 0.758
SRF Homo sapiens ENSG00000112658 D 0.758
estExt_fgeneshNG_pg.C_520029 Naegleria gruberi estExt_fgeneshNG_pg.C_520029 I 0.758
ENSCSAG00000011622 Chlorocebus sabaeus ENSCSAG00000011622 I 0.758
ENSFALG00000000878 Ficedula albicollis ENSFALG00000000878 I 0.758
SRF Equus caballus ENSECAG00000009068 I 0.758
ENSAMXG00000001100 Astyanax mexicanus ENSAMXG00000001100 I 0.758
ANCDUO_04431 Ancylostoma duodenale ANCDUO_04431 I 0.758
srfB Dictyostelium discoideum DDB_G0282835 I 0.758
HPLM_0000743501 Haemonchus placei HPLM_0000743501 I 0.758
RSKR_0001102000 Rhabditophanes kr3021 RSKR_0001102000 I 0.758
SPPG_06208 Spizellomyces punctatus SPPG_06208 I 0.758
TELCIR_03792 Teladorsagia circumcincta TELCIR_03792 I 0.758
SRF Anolis carolinensis ENSACAG00000004798 I 0.758
ENSAMEG00000012452 Ailuropoda melanoleuca ENSAMEG00000012452 I 0.758
srf Ciona intestinalis ENSCING00000018042 I 0.758
SRF Callithrix jacchus ENSCJAG00000005223 I 0.758
SRF Canis familiaris ENSCAFG00000001829 I 0.758
SRF Bos taurus ENSBTAG00000012777 I 0.758
SRF Tetraodon nigroviridis ENSTNIG00000013420 I 0.758
ENSAMXG00000003129 Astyanax mexicanus ENSAMXG00000003129 I 0.758
SRF Cavia porcellus ENSCPOG00000022327 I 0.758
SRF Gasterosteus aculeatus ENSGACG00000003778 I 0.758
ENSPFOG00000018770 Poecilia formosa ENSPFOG00000018770 I 0.758
ENSPFOG00000022718 Poecilia formosa ENSPFOG00000022718 I 0.758
ENSPPYG00000016633 Pongo abelii ENSPPYG00000016633 I 0.758
SRF Pan troglodytes ENSPTRG00000018189 I 0.758
SRF Procavia capensis ENSPCAG00000009376 I 0.758
ENSPANG00000006410 Papio anubis ENSPANG00000006410 I 0.758
srfa Gasterosteus aculeatus ENSGACG00000020002 I 0.758
ENSONIG00000010505 Oreochromis niloticus ENSONIG00000010505 I 0.758
SRF Oryzias latipes ENSORLG00000013036 I 0.758
SRF Pteropus vampyrus ENSPVAG00000008728 I 0.758
Srf Rattus norvegicus ENSRNOG00000018232 I 0.758
SRF Tursiops truncatus ENSTTRG00000007017 I 0.758
SRF Takifugu rubripes ENSTRUG00000017531 I 0.758
srfa Takifugu rubripes ENSTRUG00000011448 I 0.758
srfa Tetraodon nigroviridis ENSTNIG00000002923 I 0.758
ENSXMAG00000006964 Xiphophorus maculatus ENSXMAG00000006964 I 0.758
SRF Sus scrofa ENSSSCG00000001661 I 0.758
ENSSTOG00000014222 Ictidomys tridecemlineatus ENSSTOG00000014222 I 0.758
SRF Taeniopygia guttata ENSTGUG00000004738 I 0.758
SRF Otolemur garnettii ENSOGAG00000029623 I 0.758
ENSONIG00000010161 Oreochromis niloticus ENSONIG00000010161 I 0.758
ENSMICG00000008327 Microcebus murinus ENSMICG00000008327 I 0.758
ENSMLUG00000008828 Myotis lucifugus ENSMLUG00000008828 I 0.758
SRF Oryctolagus cuniculus ENSOCUG00000002892 I 0.758
ENSLOCG00000015887 Lepisosteus oculatus ENSLOCG00000015887 I 0.758
Aan_R005414 Calypte anna Aan_R005414 I 0.758
ENSLACG00000014404 Latimeria chalumnae ENSLACG00000014404 I 0.758
SRF Loxodonta africana ENSLAFG00000010278 I 0.758
Afo_R000461 Aptenodytes forsteri Afo_R000461 I 0.758
SRF Macaca mulatta ENSMMUG00000000033 I 0.758
SRF Monodelphis domestica ENSMODG00000018981 I 0.758
ENSNLEG00000004203 Nomascus leucogenys ENSNLEG00000004203 I 0.758
Gfo_R009695 Geospiza fortis Gfo_R009695 I 0.758
ENSOARG00000005757 Ovis aries ENSOARG00000005757 I 0.758
ENSGMOG00000008883 Gadus morhua ENSGMOG00000008883 I 0.758
Srf Mus musculus ENSMUSG00000015605 D 0.758
O9G_005180 Rozella allomycis O9G_005180 I 0.758
ENSBTAP00000016981-D1 Bos grunniens ENSBTAP00000016981-D1 I 0.758
ENSMPUG00000013090 Mustela putorius furo ENSMPUG00000013090 I 0.758
Cmyd_10009988 Chelonia mydas Cmyd_10009988 I 0.758
BXY_0217000 Bursaphelenchus xylophilus BXY_0217000 I 0.727
GALMADRAFT_220913 Galerina marginata GALMADRAFT_220913 I 0.727
DI09_81p70 Microsporidia sp DI09_81p70 I 0.727
CJA08385 Caenorhabditis japonica CJA08385 I 0.727