CpipJ_CPIJ008336 (Culex pipiens)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 CpipJ_CPIJ008336 T252704_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
bs
M03915_2.00
Drosophila melanogaster
NCCWTATAWGGN

NCCWTATAWGGN
SELEX
Nitta et al.(2015)
bs_1
0.852 0.852
bs
M03916_2.00
Drosophila melanogaster
NCCWTAHAWGGH

DCCWTDTAWGGN
SELEX
Nitta et al.(2015)
bs_2
0.852 0.852
Srf
M00178_2.00
Mus musculus
NNDDWWHHNN

NNDDWWHHNN
PBM
Badis et al.(2009)
Srf_3509
0.815 0.815
unc-120
M00684_2.00
Caenorhabditis elegans
CHWAWWDGG

CCHWWTWDG
PBM
Narasimhan et al.(2015)
pTH10822
0.815 0.815
SRF
M03341_2.00
Homo sapiens
DCCWTATATGGT

ACCATATAWGGH
SELEX
Jolma et al.(2013)
SRF_1
0.815 0.815
SRF
M03342_2.00
Homo sapiens
TKHCCWTATATGGKMA

TKMCCATATAWGGDMA
SELEX
Jolma et al.(2013)
SRF_2
0.815 0.815
SRF
M05553_2.00
Homo sapiens
CCNTANAWGG

CCWTNTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX
0.815 0.815
SRF
M07981_2.00
Homo sapiens
NNNWDNCCAWAWAWGGNVD

HBNCCWTWTWTGGNHWNNN
ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha
0.815 0.815
SRF
M07982_2.00
Homo sapiens
CCAWATAAGGNMAD

HTKNCCTTATWTGG
ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha
0.815 0.815
SRF
M07983_2.00
Homo sapiens
NNWNNCCAWAWAWGGNVD

HBNCCWTWTWTGGNNWNN
ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha
0.815 0.815
SRF
M07984_2.00
Homo sapiens
GNCCAWATADGGHMANN

NNTKDCCHTATWTGGNC
ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha
0.815 0.815
SRF
M09249_2.00
Homo sapiens
HNWBVCCAWAWAWGGNRR

YYNCCWTWTWTGGBVWND
Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A
0.815 0.815
Srf
M09254_2.00
Mus musculus
NWDVCCAWAWAWGGVMR

YKBCCWTWTWTGGBHWN
Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A
0.815 0.815
Srf
M09598_2.00
Mus musculus
CCWWATWWGGNH

DNCCWWATWWGG
Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al.
0.815 0.815
SRF
M10947_2.00
Homo sapiens
MNBWCCWTATAWGGGCAT

ATGCCCWTATAWGGWVNK
Transfac
Matys et al.(2006)
V$SRF_01
0.815 0.815
SRF
M10948_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_02
0.815 0.815
SRF
M10949_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_03
0.815 0.815
SRF
M10950_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_09
0.815 0.815
SRF
M10951_2.00
Homo sapiens
DCCWTATAWGGVSHB

VDSBCCWTATAWGGH
Transfac
Matys et al.(2006)
V$SRF_C
0.815 0.815
SRF
M10952_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q3
0.815 0.815
SRF
M10953_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q4
0.815 0.815
SRF
M10954_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_01
0.815 0.815
SRF
M10955_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_02
0.815 0.815
SRF
M10956_2.00
Homo sapiens
BNCCAWATAWGGVN

NBCCWTATWTGGNV
Transfac
Matys et al.(2006)
V$SRF_Q6
0.815 0.815
SRF
M05554_2.00
Homo sapiens
CCNTAYAWGG

CCWTRTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX
0.815 0.815
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ008336-RA MADS box 266 292

Links

Other MADS box family TFs
Other Culex pipiens TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL010925 Aedes aegypti AAEL010925 I 0.741
AALB009947 Anopheles albimanus AALB009947 I 0.880
AARA006326 Anopheles arabiensis AARA006326 I 0.957
AATE005744 Anopheles atroparvus AATE005744 I 0.815
ACEP12187 Atta cephalotes ACEP12187 I 0.852
ACHR006794 Anopheles christyi ACHR006794 I 0.815
ACOM041695 Anopheles coluzzii ACOM041695 I 0.957
ACUA001543 Anopheles culicifacies ACUA001543 I 0.815
ACYPI002973 Acyrthosiphon pisum ACYPI002973 I 0.815
AEPI007009 Anopheles epiroticus AEPI007009 I 1.000
AFAF006302 Anopheles farauti AFAF006302 I 0.957
AFUN006149 Anopheles funestus AFUN006149 I 1.000
AGAP010511 Anopheles gambiae AGAP010511 I 0.957
ALUE_0001693901 Ascaris lumbricoides ALUE_0001693901 I 0.778
AMAM005702 Anopheles maculatus AMAM005702 I 0.815
AMEC009624 Anopheles melas AMEC009624 I 0.957
AMIN001256 Anopheles minimus AMIN001256 I 0.815
ANCDUO_13359 Ancylostoma duodenale ANCDUO_13359 I 0.778
ANCDUO_18278 Ancylostoma duodenale ANCDUO_18278 I 0.913
AQUA001309 Anopheles quadriannulatus AQUA001309 I 0.957
ASTEI07121 Anopheles stephensi ASTEI07121 I 0.917
BGIBMGA001382 Bombyx mori BGIBMGA001382 I 0.917
Cflo_11261--XP_001120126.1_APIME Camponotus floridanus Cflo_11261--XP_001120126.1_APIME I 0.852
CJA08385 Caenorhabditis japonica CJA08385 I 0.815
CLEC013393 Cimex lectularius CLEC013393 I 0.815
CPIJ008336 Culex quinquefasciatus CPIJ008336 I 1.000
CPIJ016459 Culex quinquefasciatus CPIJ016459 I 0.957
CpipJ_CPIJ016459 Culex pipiens CpipJ_CPIJ016459 I 0.957
D917_02561 Trichinella nativa D917_02561 I 0.815
D918_07967 Trichuris suis D918_07967 I 0.815
DAPPUDRAFT_8703 Daphnia pulex DAPPUDRAFT_8703 I 0.815
EFV60876 Trichinella spiralis EFV60876 I 0.815
SRF Choloepus hoffmanni ENSCHOG00000008671 I 0.778
ENSCSAVG00000008682 Ciona savignyi ENSCSAVG00000008682 I 0.778
SRF Oryzias latipes ENSORLG00000013036 I 0.778
ENSXMAG00000018559 Xiphophorus maculatus ENSXMAG00000018559 I 0.815
bs Drosophila melanogaster FBgn0004101 D 0.852
GA17433 Drosophila pseudoobscura FBgn0077446 I 0.852
GF11392 Drosophila ananassae FBgn0088432 I 0.852
GG22961 Drosophila erecta FBgn0115118 I 0.852
GH20989 Drosophila grimshawi FBgn0128451 I 0.852
GI21322 Drosophila mojavensis FBgn0144052 I 0.852
GL20046 Drosophila persimilis FBgn0157643 I 0.852
GM11854 Drosophila sechellia FBgn0166795 I 0.852
GD11852 Drosophila simulans FBgn0183591 I 0.852
GJ21595 Drosophila virilis FBgn0208714 I 0.852
GK22205 Drosophila willistoni FBgn0224190 I 0.852
GE14398 Drosophila yakuba FBgn0232006 I 0.852
fgenesh2_pg.scaffold_196000035 Branchiostoma floridae fgenesh2_pg.scaffold_196000035 I 0.815
fgenesh2_pg.scaffold_8000100 Branchiostoma floridae fgenesh2_pg.scaffold_8000100 I 0.815
GB47234 Apis mellifera GB47234 I 0.852
HelroG137972 Helobdella robusta HelroG137972 I 0.704
HHAL001484-PA Halyomorpha halys HHAL001484-PA I 0.815
HMEL017831 Heliconius melpomene HMEL017831 I 0.917
Hsal_11632--XP_001120126.1_APIME Harpegnathos saltator Hsal_11632--XP_001120126.1_APIME I 0.852
ISCW019966 Ixodes scapularis ISCW019966 I 0.815
KGM_22252 Danaus plexippus KGM_22252 I 0.917
L596_g5274 Steinernema carpocapsae L596_g5274 I 0.778
L798_08800 Zootermopsis nevadensis L798_08800 I 0.852
L889_g24087 Steinernema feltiae L889_g24087 I 0.778
L892_g14520 Steinernema scapterisci L892_g14520 I 0.778
L893_g14743 Steinernema glaseri L893_g14743 I 0.778
L898_g9834 Steinernema monticolum L898_g9834 I 0.778
LCUP011662 Lucilia cuprina LCUP011662 I 0.917
LDEC007646 Leptinotarsa decemlineata LDEC007646 I 0.875
MDOA002443 Musca domestica MDOA002443 I 0.852
MESCA004860 Megaselia scalaris MESCA004860 I 0.852
NV18787 Nasonia vitripennis NV18787 I 0.852
OFLC_0001346401 Onchocerca flexuosa OFLC_0001346401 I 0.815
PPAI006358 Phlebotomus papatasi PPAI006358 I 0.733
RPRC001752 Rhodnius prolixus RPRC001752 I 0.815
RSKR_0001102000 Rhabditophanes kr3021 RSKR_0001102000 I 0.815
Sakowv30019106m.g Saccoglossus kowalevskii Sakowv30019106m.g I 0.815
SBAD_0000850501 Soboliphyme baturini SBAD_0000850501 I 0.815
SINV23963 Solenopsis invicta SINV23963 I 0.815
SMAR003014 Strigamia maritima SMAR003014 I 0.815
TC004911 Tribolium castaneum TC004911 I 0.815
TMUE_s0092001100 Trichuris muris TMUE_s0092001100 I 0.815
TTRE_0000468501 Trichuris trichiura TTRE_0000468501 I 0.815
YQE_03076 Dendroctonus ponderosae YQE_03076 I 0.880