CpipJ_CPIJ008336 (Culex pipiens)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 CpipJ_CPIJ008336 T252704_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
bs
M03915_2.00
Drosophila melanogaster
NCCWTATAWGGN

NCCWTATAWGGN
SELEX
Nitta et al.(2015)
bs_1
0.852 0.852
bs
M03916_2.00
Drosophila melanogaster
NCCWTAHAWGGH

DCCWTDTAWGGN
SELEX
Nitta et al.(2015)
bs_2
0.852 0.852
Srf
M00178_2.00
Mus musculus
NNDDWWHHNN

NNDDWWHHNN
PBM
Badis et al.(2009)
Srf_3509
0.815 0.815
unc-120
M00684_2.00
Caenorhabditis elegans
CHWAWWDGG

CCHWWTWDG
PBM
Narasimhan et al.(2015)
pTH10822
0.815 0.815
SRF
M03341_2.00
Homo sapiens
DCCWTATATGGT

ACCATATAWGGH
SELEX
Jolma et al.(2013)
SRF_1
0.815 0.815
SRF
M03342_2.00
Homo sapiens
TKHCCWTATATGGKMA

TKMCCATATAWGGDMA
SELEX
Jolma et al.(2013)
SRF_2
0.815 0.815
SRF
M05553_2.00
Homo sapiens
CCNTANAWGG

CCWTNTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX
0.815 0.815
SRF
M07981_2.00
Homo sapiens
NNNWDNCCAWAWAWGGNVD

HBNCCWTWTWTGGNHWNNN
ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha
0.815 0.815
SRF
M07982_2.00
Homo sapiens
CCAWATAAGGNMAD

HTKNCCTTATWTGG
ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha
0.815 0.815
SRF
M07983_2.00
Homo sapiens
NNWNNCCAWAWAWGGNVD

HBNCCWTWTWTGGNNWNN
ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha
0.815 0.815
SRF
M07984_2.00
Homo sapiens
GNCCAWATADGGHMANN

NNTKDCCHTATWTGGNC
ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha
0.815 0.815
SRF
M09249_2.00
Homo sapiens
HNWBVCCAWAWAWGGNRR

YYNCCWTWTWTGGBVWND
Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A
0.815 0.815
Srf
M09254_2.00
Mus musculus
NWDVCCAWAWAWGGVMR

YKBCCWTWTWTGGBHWN
Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A
0.815 0.815
Srf
M09598_2.00
Mus musculus
CCWWATWWGGNH

DNCCWWATWWGG
Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al.
0.815 0.815
SRF
M10947_2.00
Homo sapiens
MNBWCCWTATAWGGGCAT

ATGCCCWTATAWGGWVNK
Transfac
Matys et al.(2006)
V$SRF_01
0.815 0.815
SRF
M10948_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_02
0.815 0.815
SRF
M10949_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_03
0.815 0.815
SRF
M10950_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_09
0.815 0.815
SRF
M10951_2.00
Homo sapiens
DCCWTATAWGGVSHB

VDSBCCWTATAWGGH
Transfac
Matys et al.(2006)
V$SRF_C
0.815 0.815
SRF
M10952_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q3
0.815 0.815
SRF
M10953_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q4
0.815 0.815
SRF
M10954_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_01
0.815 0.815
SRF
M10955_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_02
0.815 0.815
SRF
M10956_2.00
Homo sapiens
BNCCAWATAWGGVN

NBCCWTATWTGGNV
Transfac
Matys et al.(2006)
V$SRF_Q6
0.815 0.815
SRF
M05554_2.00
Homo sapiens
CCNTAYAWGG

CCWTRTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX
0.815 0.815
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ008336-RA MADS box 266 292

Links

Other MADS box family TFs
Other Culex pipiens TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CJA14215 Caenorhabditis japonica CJA14215 I 0.000
BTMF_0000932701 Brugia timori BTMF_0000932701 N 0.000
DILT_0000824901 Diphyllobothrium latum DILT_0000824901 N 0.000
EEL_0001031901 Elaeophora elaphi EEL_0001031901 N 0.000
genemark-nMf.1.1.scaf04821-processed-gene-0.1 Meloidogyne floridensis genemark-nMf.1.1.scaf04821-processed-gene-0.1 N 0.000
Hba_13069 Heterorhabditis bacteriophora Hba_13069 N 0.000
nAv.1.0.1.g00376 Acanthocheilonema viteae nAv.1.0.1.g00376 N 0.000
OFLC_0001019101 Onchocerca flexuosa OFLC_0001019101 N 0.000
SSLN_0001714501 Schistocephalus solidus SSLN_0001714501 N 0.000
SVUK_0000379901 Strongylus vulgaris SVUK_0000379901 N 0.000
ANCDUO_20204 Ancylostoma duodenale ANCDUO_20204 N 0.000
ANCCAN_24295 Ancylostoma caninum ANCCAN_24295 N 0.000
POU4F1 Taeniopygia guttata ENSTGUG00000005421 N 0.000
POU4F2 Takifugu rubripes ENSTRUG00000001400 N 0.000
GI15417 Drosophila mojavensis FBgn0138166 N 0.000
GL14745 Drosophila persimilis FBgn0152349 N 0.000
MESCA000014 Megaselia scalaris MESCA000014 N 0.000
Afo_R005791 Aptenodytes forsteri Afo_R005791 N 0.000
Gfo_R011132 Geospiza fortis Gfo_R011132 N 0.000
AMAM008322 Anopheles maculatus AMAM008322 N 0.000
PPAI005468 Phlebotomus papatasi PPAI005468 N 0.000
TELCIR_22112 Teladorsagia circumcincta TELCIR_22112 N 0.000