CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AC233912.1_FG001
(
Zea mays
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
AC233912.1_FG001
T252753_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
M17_MAIZE
M10959_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.729
0.729
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AC233912.1_FGP001
MADS box
10
57
KIENPTNRQVTFSKRRMGLFKKANEVAILCDAQIGVIIFSGSGRMYEY
Links
Other
MADS box
family TFs
Other
Zea mays
TFs
90 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GRMZM2G128953
Zea mays
GRMZM2G128953
I
1.000
GRMZM2G135018
Zea mays
GRMZM2G135018
I
0.979
Sb06g028420
Sorghum bicolor
Sb06g028420
I
0.979
GRMZM2G005155
Zea mays
GRMZM2G005155
I
0.979
Pavir.Ga00461
Panicum virgatum
Pavir.Ga00461
I
0.979
GRMZM2G446426
Zea mays
GRMZM2G446426
N
0.958
Pavir.Gb00526
Panicum virgatum
Pavir.Gb00526
I
0.958
GRMZM2G137387
Zea mays
GRMZM2G137387
I
0.958
GRMZM2G148220
Zea mays
GRMZM2G148220
N
0.938
LPERR04G20730
Leersia perrieri
LPERR04G20730
I
0.917
OGLUM04G25090
Oryza glumaepatula
OGLUM04G25090
I
0.896
ORUFI04G26810
Oryza rufipogon
ORUFI04G26810
I
0.896
MADS31
Oryza sativa
OS04G0614100
I
0.896
ORGLA04G0222300
Oryza glaberrima
ORGLA04G0222300
I
0.896
OPUNC04G22650
Oryza punctata
OPUNC04G22650
I
0.896
OBART04G25610
Oryza barthii
OBART04G25610
I
0.896
OB04G32080
Oryza brachyantha
OB04G32080
I
0.896
OMERI04G20840
Oryza meridionalis
OMERI04G20840
I
0.896
BGIOSGA017110
Oryza indica
BGIOSGA017110
I
0.896
BRADI5G21700
Brachypodium distachyon
BRADI5G21700
I
0.875
OLONG_021245
Oryza longistaminata
OLONG_021245
I
0.875
TRIUR3_18402
Triticum urartu
TRIUR3_18402
I
0.854
MLOC_12133
Hordeum vulgare
MLOC_12133
I
0.854
Traes_2DL_6CD5A5CD9
Triticum aestivum
Traes_2DL_6CD5A5CD9
I
0.854
Traes_2AL_8DF89AA72
Triticum aestivum
Traes_2AL_8DF89AA72
I
0.854
F775_05654
Aegilops tauschii
F775_05654
I
0.854
GSMUA_Achr2G02660_001
Musa acuminata
GSMUA_Achr2G02660_001
I
0.833
GSMUA_Achr3G23580_001
Musa acuminata
GSMUA_Achr3G23580_001
I
0.792
BRADI3G05260
Brachypodium distachyon
BRADI3G05260
I
0.750
Traes_6DS_9BBDCC9F7
Triticum aestivum
Traes_6DS_9BBDCC9F7
I
0.750
Traes_6AS_57E50EE92
Triticum aestivum
Traes_6AS_57E50EE92
I
0.750
Traes_6BS_5789476CB
Triticum aestivum
Traes_6BS_5789476CB
I
0.750
TRIUR3_26896
Triticum urartu
TRIUR3_26896
I
0.750
Pavir.Da00991
Panicum virgatum
Pavir.Da00991
I
0.750
F775_30836
Aegilops tauschii
F775_30836
I
0.750
MLOC_65966
Hordeum vulgare
MLOC_65966
I
0.750
MADS29
Oryza sativa
OS02G0170300
I
0.729
OS06G0347700
Oryza sativa
OS06G0347700
I
0.729
BGIOSGA007056
Oryza indica
BGIOSGA007056
I
0.729
ORGLA02G0049700
Oryza glaberrima
ORGLA02G0049700
I
0.729
ORUFI02G05500
Oryza rufipogon
ORUFI02G05500
I
0.729
Sb04g004736
Sorghum bicolor
Sb04g004736
I
0.729
ORUFI06G14980
Oryza rufipogon
ORUFI06G14980
I
0.729
AMTR_s00002p00262770
Amborella trichopoda
AMTR_s00002p00262770
I
0.729
Carubv10026982m.g
Capsella rubella
Carubv10026982m.g
I
0.729
OPUNC06G13170
Oryza punctata
OPUNC06G13170
I
0.729
Pavir.Aa03173
Panicum virgatum
Pavir.Aa03173
I
0.729
Pavir.Ab00475
Panicum virgatum
Pavir.Ab00475
I
0.729
TT16
Vitis vinifera
VIT_01s0011g01560
I
0.729
Si018183m.g
Setaria italica
Si018183m.g
I
0.729
ORGLA06G0125600
Oryza glaberrima
ORGLA06G0125600
I
0.729
BGIOSGA022872
Oryza indica
BGIOSGA022872
I
0.729
OGLUM02G05240
Oryza glumaepatula
OGLUM02G05240
I
0.729
OGLUM06G15040
Oryza glumaepatula
OGLUM06G15040
I
0.729
OLONG_018231
Oryza longistaminata
OLONG_018231
I
0.729
OBART02G05380
Oryza barthii
OBART02G05380
I
0.729
OB02G14670
Oryza brachyantha
OB02G14670
I
0.729
F775_15097
Aegilops tauschii
F775_15097
I
0.729
LPERR02G04610
Leersia perrieri
LPERR02G04610
I
0.729
M17_MAIZE
Zea mays
M17_MAIZE
D
0.729
OMERI02G06250
Oryza meridionalis
OMERI02G06250
I
0.729
OBART06G14060
Oryza barthii
OBART06G14060
I
0.729
ONIVA06G16870
Oryza nivara
ONIVA06G16870
I
0.729
OPUNC02G04560
Oryza punctata
OPUNC02G04560
I
0.729
ONIVA02G05710
Oryza nivara
ONIVA02G05710
I
0.729
OMERI06G15180
Oryza meridionalis
OMERI06G15180
I
0.729
OLONG_023633
Oryza longistaminata
OLONG_023633
I
0.711
Carubv10027093m.g
Capsella rubella
Carubv10027093m.g
I
0.708
Thhalv10015303m.g
Eutrema salsugineum
Thhalv10015303m.g
I
0.708
Cagra.0277s0030
Capsella grandiflora
Cagra.0277s0030
I
0.708
Bostr.26833s0022
Boechera stricta
Bostr.26833s0022
I
0.708
GRMZM2G130382
Zea mays
GRMZM2G130382
I
0.708
GRMZM2G055782
Zea mays
GRMZM2G055782
I
0.708
AGL16
Arabidopsis lyrata
fgenesh2_kg.5__2158__AT3G57230.1
I
0.708
OPUNC04G12890
Oryza punctata
OPUNC04G12890
I
0.708
Bostr.15774s0334
Boechera stricta
Bostr.15774s0334
I
0.708
Pavir.J09556
Panicum virgatum
Pavir.J09556
I
0.708
AMTR_s00001p00270400
Amborella trichopoda
AMTR_s00001p00270400
I
0.708
AGL15
Vitis vinifera
VIT_13s0158g00100
I
0.708
AGL71
Arabidopsis thaliana
AT5G51870
I
0.708
AGL71
Arabidopsis lyrata
Al_scaffold_0008_1558
I
0.708
Solyc04g076680.2
Solanum lycopersicum
Solyc04g076680.2
I
0.708
AMTR_s00127p00060060
Amborella trichopoda
AMTR_s00127p00060060
I
0.708
Bo1g007520
Brassica oleracea
Bo1g007520
I
0.708
Traes_7BL_F5B6736D0
Triticum aestivum
Traes_7BL_F5B6736D0
I
0.708
mgf025830m
Mimulus guttatus
mgf025830m
I
0.708
PGSC0003DMG400009349
Solanum tuberosum
PGSC0003DMG400009349
I
0.708
OB06G22200
Oryza brachyantha
OB06G22200
I
0.708
Bra011509
Brassica rapa
Bra011509
I
0.708
Aquca_022_00241
Aquilegia coerulea
Aquca_022_00241
I
0.708