CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AMTR_s00010p00264750
(
Amborella trichopoda
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
AMTR_s00010p00264750
T252799_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.761
0.761
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ERM94528
MADS box
10
55
KLENTNGRQVTYSKRRAGILKKARELSILCDIDIALLMFSPTGKPT
Links
Other
MADS box
family TFs
Other
Amborella trichopoda
TFs
118 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.957
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.894
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.891
cassava46162.m1
Manihot esculenta
cassava46162.m1
I
0.848
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.848
F775_13266
Aegilops tauschii
F775_13266
I
0.848
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.848
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.848
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.848
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.848
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.848
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.848
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.848
MLOC_11474
Hordeum vulgare
MLOC_11474
I
0.826
TCM_014051
Theobroma cacao
TCM_014051
I
0.826
Ciclev10031963m.g
Citrus clementina
Ciclev10031963m.g
I
0.826
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.826
Cla010361
Citrullus lanatus
Cla010361
I
0.826
TCM_011687
Theobroma cacao
TCM_011687
I
0.826
Lus10030450.g
Linum usitatissimum
Lus10030450.g
I
0.826
29813.m001508
Ricinus communis
29813.m001508
I
0.826
POPTR_0008s08780
Populus trichocarpa
POPTR_0008s08780
I
0.826
Lus10026613.g
Linum usitatissimum
Lus10026613.g
I
0.826
Bra016544
Brassica rapa
Bra016544
I
0.826
orange1.1g018825m.g
Citrus sinensis
orange1.1g018825m.g
I
0.826
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.826
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.826
PK03147.1
Cannabis sativa
PK03147.1
I
0.826
SapurV1A.0458s0040
Salix purpurea
SapurV1A.0458s0040
I
0.826
Bra025685
Brassica rapa
Bra025685
I
0.826
Bra031049
Brassica rapa
Bra031049
I
0.826
MDP0000773068
Malus domestica
MDP0000773068
I
0.822
MDP0000146415
Malus domestica
MDP0000146415
I
0.822
MDP0000919323
Malus domestica
MDP0000919323
I
0.822
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.812
MDP0000147667
Malus domestica
MDP0000147667
I
0.804
Ca_16376
Cicer arietinum
Ca_16376
I
0.804
gene26028-v1.0-hybrid
Fragaria vesca
gene26028-v1.0-hybrid
I
0.804
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.804
SapurV1A.0149s0010
Salix purpurea
SapurV1A.0149s0010
N
0.804
Cla018884
Citrullus lanatus
Cla018884
I
0.804
Cucsa.112840
Cucumis sativus
Cucsa.112840
I
0.804
Cucsa.284960
Cucumis sativus
Cucsa.284960
I
0.804
MDP0000146231
Malus domestica
MDP0000146231
I
0.804
cassava17346.m1
Manihot esculenta
cassava17346.m1
I
0.804
Carubv10017440m.g
Capsella rubella
Carubv10017440m.g
I
0.804
Cagra.0534s0009
Capsella grandiflora
Cagra.0534s0009
I
0.804
Bostr.0556s0119
Boechera stricta
Bostr.0556s0119
I
0.804
Pm006479
Prunus mume
Pm006479
I
0.804
GRMZM2G441115
Zea mays
GRMZM2G441115
I
0.804
BRADI4G11097
Brachypodium distachyon
BRADI4G11097
I
0.804
LPERR11G18320
Leersia perrieri
LPERR11G18320
N
0.804
OGLUM11G21110
Oryza glumaepatula
OGLUM11G21110
N
0.804
OLONG_008007
Oryza longistaminata
OLONG_008007
N
0.804
AGL30
Arabidopsis thaliana
AT2G03060
I
0.804
POPTR_0010s17450
Populus trichocarpa
POPTR_0010s17450
N
0.804
PRUPE_ppa017562mg
Prunus persica
PRUPE_ppa017562mg
I
0.804
Si028357m.g
Setaria italica
Si028357m.g
N
0.804
PK21701.1
Cannabis sativa
PK21701.1
I
0.792
AGL65
Vitis vinifera
VIT_17s0000g06340
I
0.792
orange1.1g017511m.g
Citrus sinensis
orange1.1g017511m.g
I
0.792
30138.m004061
Ricinus communis
30138.m004061
I
0.792
Ciclev10020575m.g
Citrus clementina
Ciclev10020575m.g
I
0.792
AGL30
Arabidopsis lyrata
Al_scaffold_0005_228
I
0.783
LjSGA_031058.2
Lotus japonicus
LjSGA_031058.2
I
0.783
OBART11G21780
Oryza barthii
OBART11G21780
N
0.783
GSMUA_Achr3G24170_001
Musa acuminata
GSMUA_Achr3G24170_001
I
0.783
MDP0000193129
Malus domestica
MDP0000193129
I
0.783
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.783
Thhalv10004409m.g
Eutrema salsugineum
Thhalv10004409m.g
I
0.783
Bo9g072860
Brassica oleracea
Bo9g072860
N
0.783
OMERI11G18020
Oryza meridionalis
OMERI11G18020
N
0.783
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.783
MTR_5g041650
Medicago truncatula
MTR_5g041650
I
0.783
cassava12018.valid.m1
Manihot esculenta
cassava12018.valid.m1
I
0.783
ORGLA11G0175900
Oryza glaberrima
ORGLA11G0175900
N
0.783
OS11G0658700
Oryza sativa
OS11G0658700
N
0.783
ORUFI11G23650
Oryza rufipogon
ORUFI11G23650
N
0.783
PRUPE_ppa015857mg
Prunus persica
PRUPE_ppa015857mg
I
0.783
Pm024895
Prunus mume
Pm024895
I
0.783
Ca_18082
Cicer arietinum
Ca_18082
I
0.783
cassava19791.m1
Manihot esculenta
cassava19791.m1
I
0.771
Gorai.001G074200
Gossypium raimondii
Gorai.001G074200
I
0.771
Eucgr.B00522
Eucalyptus grandis
Eucgr.B00522
I
0.771
Gorai.008G194100
Gossypium raimondii
Gorai.008G194100
I
0.771
Bo7g080890
Brassica oleracea
Bo7g080890
I
0.761
Lus10037166.g
Linum usitatissimum
Lus10037166.g
N
0.761
GLYMA20G04500
Glycine max
GLYMA20G04500
N
0.761
AGL65
Arabidopsis lyrata
fgenesh2_kg.1__2055__AT1G18750.1
I
0.761
OPUNC11G18320
Oryza punctata
OPUNC11G18320
N
0.761
Bra024792
Brassica rapa
Bra024792
I
0.761
Bra017404
Brassica rapa
Bra017404
I
0.761
BGIOSGA035654
Oryza indica
BGIOSGA035654
N
0.761
Thhalv10019839m.g
Eutrema salsugineum
Thhalv10019839m.g
I
0.761
Gorai.013G086600
Gossypium raimondii
Gorai.013G086600
N
0.745
SELMODRAFT_449721
Selaginella moellendorffii
SELMODRAFT_449721
N
0.739
AGL94
Arabidopsis lyrata
Al_scaffold_0002_1615
N
0.739
SELMODRAFT_449720
Selaginella moellendorffii
SELMODRAFT_449720
N
0.739
AGL33
Populus trichocarpa
POPTR_0018s08400
N
0.739
AGL94
Arabidopsis thaliana
AT1G69540
N
0.739
Lus10036761.g
Linum usitatissimum
Lus10036761.g
N
0.739
Gorai.005G142100
Gossypium raimondii
Gorai.005G142100
N
0.739
GLYMA07G35610
Glycine max
GLYMA07G35610
N
0.739
Bostr.10273s0411
Boechera stricta
Bostr.10273s0411
I
0.739
Carubv10009419m.g
Capsella rubella
Carubv10009419m.g
I
0.739
Cagra.4153s0004
Capsella grandiflora
Cagra.4153s0004
I
0.739
evm.TU.supercontig_1.45
Carica papaya
evm.TU.supercontig_1.45
N
0.739
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.729
AGL65
Arabidopsis thaliana
AT1G18750
D
0.729
mgf004425m
Mimulus guttatus
mgf004425m
I
0.729
mgf000945m
Mimulus guttatus
mgf000945m
I
0.729
GSMUA_Achr2G01740_001
Musa acuminata
GSMUA_Achr2G01740_001
I
0.723
fgenesh1_pg.scaffold_163000049
Physcomitrella patens
fgenesh1_pg.scaffold_163000049
I
0.717
estExt_Genewise1.C_80073
Physcomitrella patens
estExt_Genewise1.C_80073
I
0.717
GSMUA_Achr11G14240_001
Musa acuminata
GSMUA_Achr11G14240_001
N
0.717
Solyc03g115910.1
Solanum lycopersicum
Solyc03g115910.1
I
0.717
estExt_gwp_gw1.C_340302
Physcomitrella patens
estExt_gwp_gw1.C_340302
I
0.717
estExt_fgenesh1_pm.C_80015
Physcomitrella patens
estExt_fgenesh1_pm.C_80015
I
0.708