AMTR_s00089p00081270 (Amborella trichopoda)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AMTR_s00089p00081270 T252816_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
M17_MAIZE
M10959_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.771 0.771
MADS2
M10966_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_02
0.771 0.771
AP1
M08144_2.00
Arabidopsis thaliana
MYAAAAAWRGAAA

TTTCYWTTTTTRK
ChIP-seq
Mathelier et al.(2014)
MA0940.1
0.729 0.729
O82695_MALDO
M11019_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS5_01
0.729 0.729
AP1
M10905_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSA_Q2
0.729 0.729
Q9AVU7_MALDO
M11027_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PI_01
0.729 0.729
FBP1_PETHY
M10996_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP1_01
0.708 0.708
Q9AR49_MAIZE
M10980_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M29_01
0.708 0.708
Q8GT99_TOBAC
M11006_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_02
0.708 0.708
MADS2_PETHY
M10998_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_01
0.708 0.708
Q9SBQ1_PETHY
M11017_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PFG_01
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN01839 MADS box 10 57

Links

Other MADS box family TFs
Other Amborella trichopoda TFs

211 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.Ab00475 Panicum virgatum Pavir.Ab00475 I 0.771
Pavir.Aa03173 Panicum virgatum Pavir.Aa03173 I 0.771
Sb04g004736 Sorghum bicolor Sb04g004736 I 0.771
OB01G48280 Oryza brachyantha OB01G48280 I 0.771
OBART01G39540 Oryza barthii OBART01G39540 I 0.771
OGLUM01G43760 Oryza glumaepatula OGLUM01G43760 I 0.771
Si018183m.g Setaria italica Si018183m.g I 0.771
Sb03g041860 Sorghum bicolor Sb03g041860 I 0.771
ORGLA01G0334300 Oryza glaberrima ORGLA01G0334300 I 0.771
M17_MAIZE Zea mays M17_MAIZE D 0.771
MADS2 Oryza sativa OS01G0883100 D 0.771
LPERR01G34040 Leersia perrieri LPERR01G34040 I 0.771
ORUFI05G05970 Oryza rufipogon ORUFI05G05970 I 0.771
GRMZM2G110153 Zea mays GRMZM2G110153 I 0.771
GSMUA_Achr5G01230_001 Musa acuminata GSMUA_Achr5G01230_001 I 0.771
OPUNC01G38250 Oryza punctata OPUNC01G38250 I 0.771
OB05G24910 Oryza brachyantha OB05G24910 I 0.771
BGIOSGA000377 Oryza indica BGIOSGA000377 I 0.771
OMERI01G36400 Oryza meridionalis OMERI01G36400 I 0.771
OLONG_003010 Oryza longistaminata OLONG_003010 I 0.771
ONIVA01G44390 Oryza nivara ONIVA01G44390 I 0.771
ORGLA05G0147400 Oryza glaberrima ORGLA05G0147400 I 0.750
Aquca_014_00308 Aquilegia coerulea Aquca_014_00308 I 0.750
Aquca_007_00336 Aquilegia coerulea Aquca_007_00336 I 0.750
ORGLA02G0049700 Oryza glaberrima ORGLA02G0049700 I 0.750
ONIVA02G05710 Oryza nivara ONIVA02G05710 I 0.750
GRMZM2G130382 Zea mays GRMZM2G130382 I 0.750
ORUFI02G05500 Oryza rufipogon ORUFI02G05500 I 0.750
CAL Arabidopsis thaliana AT1G26310 I 0.750
MADS29 Oryza sativa OS02G0170300 I 0.750
Pm030594 Prunus mume Pm030594 I 0.750
ORUFI05G18270 Oryza rufipogon ORUFI05G18270 I 0.750
Pm004718 Prunus mume Pm004718 I 0.750
LPERR02G04610 Leersia perrieri LPERR02G04610 I 0.750
MADS4 Oryza sativa OS05G0423400 I 0.750
GSMUA_Achr6G18670_001 Musa acuminata GSMUA_Achr6G18670_001 I 0.750
OMERI05G14780 Oryza meridionalis OMERI05G14780 I 0.750
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.750
Si002929m.g Setaria italica Si002929m.g I 0.750
OPUNC02G04560 Oryza punctata OPUNC02G04560 I 0.750
OBART02G05380 Oryza barthii OBART02G05380 I 0.750
Bo7g098190 Brassica oleracea Bo7g098190 I 0.750
Bra035952 Brassica rapa Bra035952 I 0.750
Bra012997 Brassica rapa Bra012997 I 0.750
OBART05G17040 Oryza barthii OBART05G17040 I 0.750
OLONG_005253 Oryza longistaminata OLONG_005253 I 0.750
OB02G14670 Oryza brachyantha OB02G14670 I 0.750
OMERI02G06250 Oryza meridionalis OMERI02G06250 I 0.750
BGIOSGA007056 Oryza indica BGIOSGA007056 I 0.750
BGIOSGA019900 Oryza indica BGIOSGA019900 I 0.750
Pavir.Ea03625 Panicum virgatum Pavir.Ea03625 I 0.750
OGLUM02G05240 Oryza glumaepatula OGLUM02G05240 I 0.750
Pavir.J19259 Panicum virgatum Pavir.J19259 I 0.750
ONIVA05G17790 Oryza nivara ONIVA05G17790 I 0.750
Cagra.6677s0007 Capsella grandiflora Cagra.6677s0007 I 0.729
Cagra.1157s0032 Capsella grandiflora Cagra.1157s0032 I 0.729
POPTR_0004s11430 Populus trichocarpa POPTR_0004s11430 I 0.729
Traes_6DS_9BBDCC9F7 Triticum aestivum Traes_6DS_9BBDCC9F7 I 0.729
Traes_6BS_5789476CB Triticum aestivum Traes_6BS_5789476CB I 0.729
Traes_6AS_57E50EE92 Triticum aestivum Traes_6AS_57E50EE92 I 0.729
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.729
TRIUR3_26896 Triticum urartu TRIUR3_26896 I 0.729
VIT_01s0011g00100 Vitis vinifera VIT_01s0011g00100 I 0.729
Cla023547 Citrullus lanatus Cla023547 I 0.729
Ca_24649 Cicer arietinum Ca_24649 I 0.729
Ca_03887 Cicer arietinum Ca_03887 I 0.729
PI Vitis vinifera VIT_18s0001g01760 I 0.729
cassava9991.m1 Manihot esculenta cassava9991.m1 I 0.729
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.729
PRUPE_ppa010723mg Prunus persica PRUPE_ppa010723mg I 0.729
POPTR_0010s16390 Populus trichocarpa POPTR_0010s16390 I 0.729
Bostr.10273s0459 Boechera stricta Bostr.10273s0459 I 0.729
Bostr.12659s0367 Boechera stricta Bostr.12659s0367 I 0.729
CAL Arabidopsis lyrata scaffold_102909.1 I 0.729
AGL8 Arabidopsis lyrata scaffold_802730.1 I 0.729
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.729
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.729
SELMODRAFT_449594 Selaginella moellendorffii SELMODRAFT_449594 I 0.729
SELMODRAFT_449545 Selaginella moellendorffii SELMODRAFT_449545 I 0.729
Bostr.26833s0146 Boechera stricta Bostr.26833s0146 I 0.729
Carubv10027017m.g Capsella rubella Carubv10027017m.g I 0.729
Carubv10011954m.g Capsella rubella Carubv10011954m.g I 0.729
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.729
Bra029347 Brassica rapa Bra029347 I 0.729
AP1 Arabidopsis lyrata fgenesh2_kg.2__1169__AT1G69120.1 I 0.729
Thhalv10004769m.g Eutrema salsugineum Thhalv10004769m.g I 0.729
Bra038326 Brassica rapa Bra038326 I 0.729
Bo9g014400 Brassica oleracea Bo9g014400 I 0.729
O82695_MALDO Malus domestica O82695_MALDO D 0.729
MDP0000013331 Malus domestica MDP0000013331 I 0.729
MLOC_65966 Hordeum vulgare MLOC_65966 I 0.729
AGL8 Arabidopsis thaliana AT5G60910 I 0.729
chr1.CM0163.120.nc Lotus japonicus chr1.CM0163.120.nc I 0.729
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.729
SapurV1A.0072s0360 Salix purpurea SapurV1A.0072s0360 I 0.729
Carubv10022005m.g Capsella rubella Carubv10022005m.g I 0.729
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.729
Thhalv10019025m.g Eutrema salsugineum Thhalv10019025m.g I 0.729
F775_30836 Aegilops tauschii F775_30836 I 0.729
AP1 Arabidopsis thaliana AT1G69120 D 0.729
BRADI3G05260 Brachypodium distachyon BRADI3G05260 I 0.729
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.708
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.708
SapurV1A.0323s0180 Salix purpurea SapurV1A.0323s0180 I 0.708
cassava46263.m1 Manihot esculenta cassava46263.m1 I 0.708
SapurV1A.0176s0500 Salix purpurea SapurV1A.0176s0500 I 0.708
SapurV1A.2206s0010 Salix purpurea SapurV1A.2206s0010 I 0.708
29648.m001978 Ricinus communis 29648.m001978 I 0.708
Q9SBQ1_PETHY Petunia x hybrida Q9SBQ1_PETHY D 0.708
Q8GT99_TOBAC Nicotiana tabacum Q8GT99_TOBAC D 0.708
LjT46F13.10.nd Lotus japonicus LjT46F13.10.nd I 0.708
30138.m003939 Ricinus communis 30138.m003939 I 0.708
cassava10810.m1 Manihot esculenta cassava10810.m1 I 0.708
SapurV1A.0383s0080 Salix purpurea SapurV1A.0383s0080 I 0.708
SapurV1A.0884s0020 Salix purpurea SapurV1A.0884s0020 I 0.708
cassava2598.m1 Manihot esculenta cassava2598.m1 I 0.708
Thhalv10008576m.g Eutrema salsugineum Thhalv10008576m.g I 0.708
cassava29331.valid.m1 Manihot esculenta cassava29331.valid.m1 I 0.708
Pavir.J00016 Panicum virgatum Pavir.J00016 I 0.708
Gorai.001G075800 Gossypium raimondii Gorai.001G075800 I 0.708
gene26119-v1.0-hybrid Fragaria vesca gene26119-v1.0-hybrid I 0.708
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.708
Gorai.003G103000 Gossypium raimondii Gorai.003G103000 I 0.708
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.708
gene04562-v1.0-hybrid Fragaria vesca gene04562-v1.0-hybrid I 0.708
evm.TU.supercontig_1.162 Carica papaya evm.TU.supercontig_1.162 I 0.708
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.708
Ciclev10016394m.g Citrus clementina Ciclev10016394m.g I 0.708
Eucgr.B00634 Eucalyptus grandis Eucgr.B00634 I 0.708
Eucgr.K02547 Eucalyptus grandis Eucgr.K02547 I 0.708
Gorai.012G185500 Gossypium raimondii Gorai.012G185500 I 0.708
Lus10007983.g Linum usitatissimum Lus10007983.g I 0.708
orange1.1g035470m.g Citrus sinensis orange1.1g035470m.g I 0.708
Cucsa.113430 Cucumis sativus Cucsa.113430 I 0.708
orange1.1g036452m.g Citrus sinensis orange1.1g036452m.g I 0.708
orange1.1g040075m.g Citrus sinensis orange1.1g040075m.g I 0.708
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.708
e_gw1.55.13.1 Physcomitrella patens e_gw1.55.13.1 I 0.708
Lus10021140.g Linum usitatissimum Lus10021140.g I 0.708
Aquca_002_00911 Aquilegia coerulea Aquca_002_00911 I 0.708
mgf007109m Mimulus guttatus mgf007109m I 0.708
fgenesh1_pg.scaffold_118000119 Physcomitrella patens fgenesh1_pg.scaffold_118000119 I 0.708
Pavir.J33965 Panicum virgatum Pavir.J33965 I 0.708
PRUPE_ppa010308mg Prunus persica PRUPE_ppa010308mg I 0.708
GLYMA14G03100 Glycine max GLYMA14G03100 I 0.708
GLYMA16G13070 Glycine max GLYMA16G13070 I 0.708
GLYMA17G08890 Glycine max GLYMA17G08890 I 0.708
GLYMA08G36380 Glycine max GLYMA08G36380 I 0.708
GLYMA08G06991 Glycine max GLYMA08G06991 I 0.708
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.708
GLYMA06G22650 Glycine max GLYMA06G22650 I 0.708
GRMZM2G152862 Zea mays GRMZM2G152862 I 0.708
GRMZM2G359952 Zea mays GRMZM2G359952 I 0.708
MLOC_5375 Hordeum vulgare MLOC_5375 I 0.708
MLOC_57700 Hordeum vulgare MLOC_57700 I 0.708
GSMUA_Achr6G14760_001 Musa acuminata GSMUA_Achr6G14760_001 I 0.708
GSMUA_Achr5G06590_001 Musa acuminata GSMUA_Achr5G06590_001 I 0.708
GSMUA_Achr3G02280_001 Musa acuminata GSMUA_Achr3G02280_001 I 0.708
GSMUA_Achr3G30440_001 Musa acuminata GSMUA_Achr3G30440_001 I 0.708
GLYMA04G43640 Glycine max GLYMA04G43640 I 0.708
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.708
Bo2g161210 Brassica oleracea Bo2g161210 I 0.708
Bo6g095760 Brassica oleracea Bo6g095760 I 0.708
Bo6g108600 Brassica oleracea Bo6g108600 I 0.708
BGIOSGA018621 Oryza indica BGIOSGA018621 I 0.708
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.708
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.708
AMTR_s00002p00262770 Amborella trichopoda AMTR_s00002p00262770 I 0.708
Bra004007 Brassica rapa Bra004007 I 0.708
Bra004361 Brassica rapa Bra004361 I 0.708
GLYMA02G13420 Glycine max GLYMA02G13420 I 0.708
GLYMA02G45730 Glycine max GLYMA02G45730 I 0.708
GLYMA01G08150 Glycine max GLYMA01G08150 I 0.708
BRADI2G57000 Brachypodium distachyon BRADI2G57000 I 0.708
Bra011021 Brassica rapa Bra011021 I 0.708
BRADI2G06330 Brachypodium distachyon BRADI2G06330 I 0.708
MTR_4g109830 Medicago truncatula MTR_4g109830 I 0.708
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.708
Solyc06g069430.2 Solanum lycopersicum Solyc06g069430.2 I 0.708
Solyc07g055920.2 Solanum lycopersicum Solyc07g055920.2 I 0.708
TCM_011475 Theobroma cacao TCM_011475 I 0.708
Solyc03g114830.2 Solanum lycopersicum Solyc03g114830.2 I 0.708
Si023214m.g Setaria italica Si023214m.g I 0.708
AGL8_SOLLC Solanum lycopersicum AGL8_SOLLC I 0.708
Q9AR49_MAIZE Zea mays Q9AR49_MAIZE D 0.708
TCM_014345 Theobroma cacao TCM_014345 I 0.708
TCM_035212 Theobroma cacao TCM_035212 I 0.708
Cla018825 Citrullus lanatus Cla018825 I 0.708
Pm025026 Prunus mume Pm025026 I 0.708
Ca_13222 Cicer arietinum Ca_13222 I 0.708
Ca_12381 Cicer arietinum Ca_12381 I 0.708
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.708
AP3 Vitis vinifera VIT_18s0001g13460 I 0.708
POPTR_0013s09960 Populus trichocarpa POPTR_0013s09960 I 0.708
POPTR_0012s05950 Populus trichocarpa POPTR_0012s05950 I 0.708
OGLUM05G06900 Oryza glumaepatula OGLUM05G06900 I 0.708
OLONG_018464 Oryza longistaminata OLONG_018464 I 0.708
OMERI05G05900 Oryza meridionalis OMERI05G05900 I 0.708
OBART05G06600 Oryza barthii OBART05G06600 I 0.708
MTR_8g066260 Medicago truncatula MTR_8g066260 I 0.708
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.708
MTR_7g016630 Medicago truncatula MTR_7g016630 I 0.708
ONIVA05G07370 Oryza nivara ONIVA05G07370 I 0.708
ORUFI05G07100 Oryza rufipogon ORUFI05G07100 I 0.708
PGSC0003DMG400028442 Solanum tuberosum PGSC0003DMG400028442 I 0.708
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.708
PGSC0003DMG400024625 Solanum tuberosum PGSC0003DMG400024625 I 0.708
PGSC0003DMG400017295 Solanum tuberosum PGSC0003DMG400017295 I 0.708
OS05G0203800 Oryza sativa OS05G0203800 I 0.708
PGSC0003DMG400004081 Solanum tuberosum PGSC0003DMG400004081 I 0.708
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.708