AGL27 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT1G77080 T252862_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL27
M08145_2.00
Arabidopsis thaliana
MCMAAAATRGAAAB

VTTTCYATTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA1012.1
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FLC
M06990_2.00
Arabidopsis thaliana
WWDMYNDWWWWGGAAASW

WSTTTCCWWWWHNRKHWW
Dap-seq
OMalley et al.(2016)
AGL25_col_a
0.851 0.851
FLC
M06991_2.00
Arabidopsis thaliana
WCYHAAAAWGGAAAS

STTTCCWTTTTDRGW
Dap-seq
OMalley et al.(2016)
AGL25_colamp_a
0.851 0.851
FLC
M08147_2.00
Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH

DDBTTTCYWWTTTBRGHWWNN
ChIP-seq
Mathelier et al.(2014)
MA0558.1
0.851 0.851
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G77080.11 MADS box 10 56
AT1G77080.12 MADS box 10 56
AT1G77080.2 MADS box 10 56
AT1G77080.4 MADS box 10 56
AT1G77080.5 MADS box 10 56
AT1G77080.8 MADS box 10 56

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

Invalid Input OrderBy

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action