CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AGL30
(
Arabidopsis thaliana
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
AT2G03060
T252865_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing)family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.783
0.783
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT2G03060.1
MADS box
10
55
KLENTNGRQSTFAKRKNGILKKANELSILCDIDIVLLMFSPTGKAA
AT2G03060.2
MADS box
10
55
KLENTNGRQSTFAKRKNGILKKANELSILCDIDIVLLMFSPTGKAA
AT2G03060.3
MADS box
10
55
KLENTNGRQSTFAKRKNGILKKANELSILCDIDIVLLMFSPTGKAA
AT2G03060.7
MADS box
10
55
KLENTNGRQSTFAKRKNGILKKANELSILCDIDIVLLMFSPTGKAA
Links
Other
MADS box
family TFs
Other
Arabidopsis thaliana
TFs
89 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy