CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
AGL29
(
Arabidopsis thaliana
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
AT2G34440
T252873_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL91
M10922_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G66656_01
0.833
0.833
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT2G34440.1
MADS box
10
57
MVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSY
Links
Other
MADS box
family TFs
Other
Arabidopsis thaliana
TFs
53 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bostr.23794s0666
Boechera stricta
Bostr.23794s0666
I
1.000
AGL29
Arabidopsis lyrata
fgenesh2_kg.4__1464__AT2G34440.1
I
1.000
Cagra.7352s0007
Capsella grandiflora
Cagra.7352s0007
I
1.000
Carubv10025656m.g
Capsella rubella
Carubv10025656m.g
I
1.000
Thhalv10017825m.g
Eutrema salsugineum
Thhalv10017825m.g
I
0.979
Bo4g182590
Brassica oleracea
Bo4g182590
I
0.979
Bra021910
Brassica rapa
Bra021910
I
0.979
Carubv10014761m.g
Capsella rubella
Carubv10014761m.g
I
0.833
Thhalv10022154m.g
Eutrema salsugineum
Thhalv10022154m.g
I
0.833
AGL91
Arabidopsis thaliana
AT3G66656
D
0.833
AGL91
Arabidopsis lyrata
fgenesh2_kg.3__679__AT3G66656.1
I
0.833
Cagra.0133s0015
Capsella grandiflora
Cagra.0133s0015
I
0.833
Bostr.22252s0371
Boechera stricta
Bostr.22252s0371
I
0.812
29693.m002039
Ricinus communis
29693.m002039
I
0.792
PRUPE_ppa024816mg
Prunus persica
PRUPE_ppa024816mg
I
0.792
TCM_029518
Theobroma cacao
TCM_029518
I
0.792
gene14058-v1.0-hybrid
Fragaria vesca
gene14058-v1.0-hybrid
I
0.792
Bra001209
Brassica rapa
Bra001209
I
0.792
Bo3g060720
Brassica oleracea
Bo3g060720
I
0.792
orange1.1g037442m.g
Citrus sinensis
orange1.1g037442m.g
I
0.792
gene30567-v1.0-hybrid
Fragaria vesca
gene30567-v1.0-hybrid
I
0.792
Pm030655
Prunus mume
Pm030655
I
0.792
Ciclev10017472m.g
Citrus clementina
Ciclev10017472m.g
I
0.792
cassava10519.m1
Manihot esculenta
cassava10519.m1
I
0.771
Ca_05023
Cicer arietinum
Ca_05023
I
0.771
Lus10040832.g
Linum usitatissimum
Lus10040832.g
N
0.750
Gorai.010G165500
Gossypium raimondii
Gorai.010G165500
I
0.750
MDP0000274606
Malus domestica
MDP0000274606
N
0.750
SapurV1A.0560s0040
Salix purpurea
SapurV1A.0560s0040
N
0.750
SapurV1A.2238s0010
Salix purpurea
SapurV1A.2238s0010
N
0.750
Eucgr.D00311
Eucalyptus grandis
Eucgr.D00311
N
0.750
Eucgr.D00313
Eucalyptus grandis
Eucgr.D00313
N
0.750
MTR_8g079502
Medicago truncatula
MTR_8g079502
I
0.750
POPTR_0004s13600
Populus trichocarpa
POPTR_0004s13600
N
0.750
MTR_1g047550
Medicago truncatula
MTR_1g047550
I
0.729
MTR_8g051580
Medicago truncatula
MTR_8g051580
I
0.729
Cucsa.212320
Cucumis sativus
Cucsa.212320
N
0.729
Cla019897
Citrullus lanatus
Cla019897
N
0.729
evm.TU.supercontig_25.93
Carica papaya
evm.TU.supercontig_25.93
I
0.729
Eucgr.D00312
Eucalyptus grandis
Eucgr.D00312
N
0.729
Ca_24185
Cicer arietinum
Ca_24185
I
0.708
LjSGA_017605.1
Lotus japonicus
LjSGA_017605.1
I
0.708
GLYMA05G35820
Glycine max
GLYMA05G35820
I
0.708
chr4.LjT16L01.50.nd
Lotus japonicus
chr4.LjT16L01.50.nd
I
0.708
GLYMA05G35811
Glycine max
GLYMA05G35811
I
0.708
GLYMA08G03830
Glycine max
GLYMA08G03830
I
0.708
Lus10011787.g
Linum usitatissimum
Lus10011787.g
N
0.708
MTR_4g131030
Medicago truncatula
MTR_4g131030
I
0.708
MTR_1g054265
Medicago truncatula
MTR_1g054265
I
0.708
GLYMA18G20830
Glycine max
GLYMA18G20830
I
0.708
MTR_1g063160
Medicago truncatula
MTR_1g063160
I
0.708
PRUPE_ppa021886mg
Prunus persica
PRUPE_ppa021886mg
N
0.708
Aquca_054_00126
Aquilegia coerulea
Aquca_054_00126
N
0.708