AT3G05860 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT3G05860 T252880_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G05860.1 MADS box 10 58
AT3G05860.2 MADS box 10 58
AT3G05860.3 MADS box 10 58

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.2570s0083 Boechera stricta Bostr.2570s0083 I 0.938
Thhalv10021183m.g Eutrema salsugineum Thhalv10021183m.g I 0.864
Bra039404 Brassica rapa Bra039404 N 0.826
Bo5g145010 Brassica oleracea Bo5g145010 N 0.826
Cagra.1772s0002 Capsella grandiflora Cagra.1772s0002 N 0.812
Carubv10015167m.g Capsella rubella Carubv10015167m.g N 0.812
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.773
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.771
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.771
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.771
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.771
AGL80 Arabidopsis thaliana AT5G48670 D 0.771
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.759
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.750
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.750
30128.m008984 Ricinus communis 30128.m008984 I 0.750
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.750
TCM_026842 Theobroma cacao TCM_026842 I 0.750
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.729
Bra029469 Brassica rapa Bra029469 I 0.729
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.729
Bo9g078450 Brassica oleracea Bo9g078450 I 0.729
Bo2g104810 Brassica oleracea Bo2g104810 I 0.729
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.729
Bra018490 Brassica rapa Bra018490 I 0.729
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.729
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.729
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.729
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.729
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.727
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.727
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.727
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.711
TCM_026845 Theobroma cacao TCM_026845 I 0.708
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.708
gene04949-v1.0-hybrid Fragaria vesca gene04949-v1.0-hybrid I 0.708
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.708
TCM_025670 Theobroma cacao TCM_025670 I 0.708
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.708
Ca_06495 Cicer arietinum Ca_06495 I 0.705
mgf026186m Mimulus guttatus mgf026186m I 0.705
TCM_025671 Theobroma cacao TCM_025671 I 0.702
Pm003257 Prunus mume Pm003257 I 0.702
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.702