CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AGL51
(
Arabidopsis thaliana
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
AT4G02235
T252889_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL78
M10932_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT5G65330_01
0.979
0.979
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT4G02235.1
MADS box
7
54
SSSSSSRNSTSLTNRLKTIFKKAEELSILCAIDVCVIYYGPDGELRTW
Links
Other
MADS box
family TFs
Other
Arabidopsis thaliana
TFs
25 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AGL78
Arabidopsis thaliana
AT5G65330
D
0.979
AGL52
Arabidopsis thaliana
AT4G11250
I
0.936
fgenesh2_kg.8__2584__AT5G65330.1
Arabidopsis lyrata
fgenesh2_kg.8__2584__AT5G65330.1
I
0.917
Bostr.0568s0255
Boechera stricta
Bostr.0568s0255
I
0.848
Bostr.10058s0014
Boechera stricta
Bostr.10058s0014
I
0.809
Bostr.3751s0043
Boechera stricta
Bostr.3751s0043
I
0.787
Bostr.3751s0039
Boechera stricta
Bostr.3751s0039
I
0.771
Bostr.3751s0030
Boechera stricta
Bostr.3751s0030
I
0.750
Bostr.3751s0025
Boechera stricta
Bostr.3751s0025
I
0.750
Bostr.3751s0031
Boechera stricta
Bostr.3751s0031
I
0.750
Carubv10007591m.g
Capsella rubella
Carubv10007591m.g
I
0.745
Thhalv10005313m.g
Eutrema salsugineum
Thhalv10005313m.g
I
0.745
AGL77
Arabidopsis thaliana
AT5G38740
I
0.745
Al_scaffold_0007_3741
Arabidopsis lyrata
Al_scaffold_0007_3741
I
0.745
AGL81
Arabidopsis thaliana
AT5G39750
I
0.745
AGL76
Arabidopsis thaliana
AT5G40120
I
0.745
fgenesh2_kg.7__3412__AT5G41200.1
Arabidopsis lyrata
fgenesh2_kg.7__3412__AT5G41200.1
I
0.739
scaffold_704060.1
Arabidopsis lyrata
scaffold_704060.1
I
0.739
AGL105
Arabidopsis thaliana
AT5G37415
I
0.731
Carubv10006654m.g
Capsella rubella
Carubv10006654m.g
I
0.729
Bo00615s090
Brassica oleracea
Bo00615s090
I
0.729
AGL98
Arabidopsis thaliana
AT5G39810
I
0.723
Bra031864
Brassica rapa
Bra031864
I
0.708
AGL75
Arabidopsis thaliana
AT5G41200
I
0.705
Bo4g139260
Brassica oleracea
Bo4g139260
I
0.700