PI (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT5G20240 T252904_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Floral homeotic gene encoding a MADS domain transcription factor. Required for the specification of petal and stamen identities.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PI
M08148_2.00
Arabidopsis thaliana
MCMAAARWRGAAAR

YTTTCYWYTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA0559.1
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MADS2_PETHY
M10998_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_01
0.750 0.750
Q9AVU7_MALDO
M11027_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PI_01
0.750 0.750
AGL6
M06986_2.00
Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW

WWNTTWCYWTTTTDGGWAA
Dap-seq
OMalley et al.(2016)
AGL6_col_a
0.708 0.708
FBP1_PETHY
M10996_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP1_01
0.708 0.708
Q9AR49_MAIZE
M10980_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M29_01
0.708 0.708
MAD14_ORYSJ
M10960_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS14_01
0.708 0.708
MAD17_ORYSJ
M10961_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS17_01
0.708 0.708
Q9ZRA5_MALDO
M11030_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_04
0.708 0.708
MADS6
M10967_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS6_01
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G20240.1 MADS box 10 57
AT5G20240.2 MADS box 10 57

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

183 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Thhalv10014683m.g Eutrema salsugineum Thhalv10014683m.g I 0.979
PI Arabidopsis lyrata fgenesh2_kg.6__2063__AT5G20240.1 I 0.979
Carubv10001962m.g Capsella rubella Carubv10001962m.g I 0.979
Bo3g010390 Brassica oleracea Bo3g010390 I 0.979
Cagra.0179s0008 Capsella grandiflora Cagra.0179s0008 I 0.979
Bostr.26527s0175 Boechera stricta Bostr.26527s0175 I 0.979
Bo2g020730 Brassica oleracea Bo2g020730 I 0.958
Bo3g014100 Brassica oleracea Bo3g014100 I 0.958
Bra006549 Brassica rapa Bra006549 I 0.958
Bra020093 Brassica rapa Bra020093 I 0.958
Bra002285 Brassica rapa Bra002285 I 0.938
Bo9g152080 Brassica oleracea Bo9g152080 I 0.938
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.812
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.812
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.792
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.792
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.792
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.792
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.792
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.792
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.792
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.792
Pm004718 Prunus mume Pm004718 I 0.771
TCM_035212 Theobroma cacao TCM_035212 I 0.771
29648.m001978 Ricinus communis 29648.m001978 I 0.771
Ca_13111 Cicer arietinum Ca_13111 I 0.771
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.771
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.771
PI Vitis vinifera VIT_18s0001g01760 I 0.750
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.750
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.750
MTR_5g046790 Medicago truncatula MTR_5g046790 I 0.750
Aquca_032_00047 Aquilegia coerulea Aquca_032_00047 I 0.750
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.750
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.750
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.750
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.750
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.750
Cla023547 Citrullus lanatus Cla023547 I 0.750
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.750
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.750
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.729
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.729
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.729
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.727
PK27158.1 Cannabis sativa PK27158.1 I 0.714
mgf007278m Mimulus guttatus mgf007278m I 0.708
cassava46263.m1 Manihot esculenta cassava46263.m1 I 0.708
Si030896m.g Setaria italica Si030896m.g I 0.708
mgf006158m Mimulus guttatus mgf006158m I 0.708
Si023214m.g Setaria italica Si023214m.g I 0.708
mgf001713m Mimulus guttatus mgf001713m I 0.708
mgf003143m Mimulus guttatus mgf003143m I 0.708
TRIUR3_22246 Triticum urartu TRIUR3_22246 I 0.708
VIT_15s0048g01270 Vitis vinifera VIT_15s0048g01270 I 0.708
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.708
Traes_6DL_5B1D4DBF5 Triticum aestivum Traes_6DL_5B1D4DBF5 I 0.708
Pm018087 Prunus mume Pm018087 I 0.708
Traes_6BL_7C6B17284 Triticum aestivum Traes_6BL_7C6B17284 I 0.708
Traes_6AL_1F7DAC5FA Triticum aestivum Traes_6AL_1F7DAC5FA I 0.708
Ca_24649 Cicer arietinum Ca_24649 I 0.708
cassava28636.m1 Manihot esculenta cassava28636.m1 I 0.708
TCM_005458 Theobroma cacao TCM_005458 I 0.708
30174.m008934 Ricinus communis 30174.m008934 I 0.708
mgf008207m Mimulus guttatus mgf008207m I 0.708
Ciclev10021911m.g Citrus clementina Ciclev10021911m.g I 0.708
Pavir.Aa00924 Panicum virgatum Pavir.Aa00924 I 0.708
Pavir.Ab02707 Panicum virgatum Pavir.Ab02707 I 0.708
Pavir.Ia00530 Panicum virgatum Pavir.Ia00530 I 0.708
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.708
orange1.1g037149m.g Citrus sinensis orange1.1g037149m.g I 0.708
Lus10034662.g Linum usitatissimum Lus10034662.g I 0.708
MDP0000289836 Malus domestica MDP0000289836 I 0.708
Pavir.J00016 Panicum virgatum Pavir.J00016 I 0.708
Pavir.J03093 Panicum virgatum Pavir.J03093 I 0.708
CM0547.50.nc Lotus japonicus CM0547.50.nc I 0.708
PDK_20s1538871g001 Phoenix dactylifera PDK_20s1538871g001 I 0.708
Thhalv10004769m.g Eutrema salsugineum Thhalv10004769m.g I 0.708
SapurV1A.0578s0120 Salix purpurea SapurV1A.0578s0120 I 0.708
Pavir.J33965 Panicum virgatum Pavir.J33965 I 0.708
Q9ZRA5_MALDO Malus domestica Q9ZRA5_MALDO D 0.708
Lus10017871.g Linum usitatissimum Lus10017871.g I 0.708
Gorai.007G093700 Gossypium raimondii Gorai.007G093700 I 0.708
Carubv10017886m.g Capsella rubella Carubv10017886m.g I 0.708
Carubv10023910m.g Capsella rubella Carubv10023910m.g I 0.708
Cagra.0578s0070 Capsella grandiflora Cagra.0578s0070 I 0.708
Cagra.0050s0135 Capsella grandiflora Cagra.0050s0135 I 0.708
Bostr.25993s0209 Boechera stricta Bostr.25993s0209 I 0.708
Bostr.26833s0146 Boechera stricta Bostr.26833s0146 I 0.708
Carubv10027017m.g Capsella rubella Carubv10027017m.g I 0.708
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.708
evm.TU.supercontig_414.3 Carica papaya evm.TU.supercontig_414.3 I 0.708
gene19428-v1.0-hybrid Fragaria vesca gene19428-v1.0-hybrid I 0.708
evm.TU.supercontig_125.55 Carica papaya evm.TU.supercontig_125.55 I 0.708
Eucgr.B00634 Eucalyptus grandis Eucgr.B00634 I 0.708
Si018160m.g Setaria italica Si018160m.g I 0.708
Eucgr.B00633 Eucalyptus grandis Eucgr.B00633 I 0.708
Aquca_002_00911 Aquilegia coerulea Aquca_002_00911 I 0.708
Sb01g007790 Sorghum bicolor Sb01g007790 I 0.708
GRMZM2G553379 Zea mays GRMZM2G553379 I 0.708
GSMUA_Achr10G18600_001 Musa acuminata GSMUA_Achr10G18600_001 I 0.708
GSMUA_Achr11G07760_001 Musa acuminata GSMUA_Achr11G07760_001 I 0.708
GSMUA_Achr11G21480_001 Musa acuminata GSMUA_Achr11G21480_001 I 0.708
GRMZM2G160565 Zea mays GRMZM2G160565 I 0.708
GRMZM2G152862 Zea mays GRMZM2G152862 I 0.708
GLYMA18G45761 Glycine max GLYMA18G45761 I 0.708
GRMZM2G032339 Zea mays GRMZM2G032339 I 0.708
GRMZM2G147716 Zea mays GRMZM2G147716 I 0.708
GSMUA_Achr1G00750_001 Musa acuminata GSMUA_Achr1G00750_001 I 0.708
GSMUA_Achr2G10250_001 Musa acuminata GSMUA_Achr2G10250_001 I 0.708
LPERR04G18560 Leersia perrieri LPERR04G18560 I 0.708
MAD14_ORYSJ Oryza sativa MAD14_ORYSJ D 0.708
MAD17_ORYSJ Oryza sativa MAD17_ORYSJ D 0.708
LPERR02G22830 Leersia perrieri LPERR02G22830 I 0.708
GSMUA_Achr7G00460_001 Musa acuminata GSMUA_Achr7G00460_001 I 0.708
GSMUA_Achr4G23540_001 Musa acuminata GSMUA_Achr4G23540_001 I 0.708
GSMUA_Achr4G30120_001 Musa acuminata GSMUA_Achr4G30120_001 I 0.708
GSMUA_Achr6G00050_001 Musa acuminata GSMUA_Achr6G00050_001 I 0.708
GLYMA17G08890 Glycine max GLYMA17G08890 I 0.708
GLYMA16G32540 Glycine max GLYMA16G32540 I 0.708
Bo6g072840 Brassica oleracea Bo6g072840 I 0.708
Bo7g098190 Brassica oleracea Bo7g098190 I 0.708
Bra003278 Brassica rapa Bra003278 I 0.708
Bra012997 Brassica rapa Bra012997 I 0.708
BGIOSGA016980 Oryza indica BGIOSGA016980 I 0.708
BGIOSGA009798 Oryza indica BGIOSGA009798 I 0.708
AGL18 Arabidopsis thaliana AT3G57390 I 0.708
AGL8 Arabidopsis thaliana AT5G60910 I 0.708
BGIOSGA008820 Oryza indica BGIOSGA008820 I 0.708
Bra029347 Brassica rapa Bra029347 I 0.708
BRADI1G21980 Brachypodium distachyon BRADI1G21980 I 0.708
GLYMA03G02210 Glycine max GLYMA03G02210 I 0.708
GLYMA05G07380 Glycine max GLYMA05G07380 I 0.708
GLYMA07G08890 Glycine max GLYMA07G08890 I 0.708
GLYMA03G02191 Glycine max GLYMA03G02191 I 0.708
GLYMA02G13420 Glycine max GLYMA02G13420 I 0.708
BRADI3G51800 Brachypodium distachyon BRADI3G51800 I 0.708
F775_31247 Aegilops tauschii F775_31247 I 0.708
AGL6 Arabidopsis lyrata fgenesh2_kg.4__2761__AT2G45650.1 I 0.708
MLOC_52944 Hordeum vulgare MLOC_52944 I 0.708
MTR_4g109830 Medicago truncatula MTR_4g109830 I 0.708
ORUFI04G24470 Oryza rufipogon ORUFI04G24470 I 0.708
MADS6 Oryza sativa OS02G0682200 D 0.708
OS03G0752800 Oryza sativa OS03G0752800 I 0.708
OS04G0580700 Oryza sativa OS04G0580700 I 0.708
ORUFI03G35930 Oryza rufipogon ORUFI03G35930 I 0.708
ORUFI02G29550 Oryza rufipogon ORUFI02G29550 I 0.708
ORGLA02G0240800 Oryza glaberrima ORGLA02G0240800 I 0.708
ORGLA03G0314900 Oryza glaberrima ORGLA03G0314900 I 0.708
ORGLA04G0197900 Oryza glaberrima ORGLA04G0197900 I 0.708
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.708
PRUPE_ppa019932mg Prunus persica PRUPE_ppa019932mg I 0.708
SELMODRAFT_449545 Selaginella moellendorffii SELMODRAFT_449545 I 0.708
SELMODRAFT_449594 Selaginella moellendorffii SELMODRAFT_449594 I 0.708
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.708
AGL8 Arabidopsis lyrata scaffold_802730.1 I 0.708
Sb04g031750 Sorghum bicolor Sb04g031750 I 0.708
Q9AR49_MAIZE Zea mays Q9AR49_MAIZE D 0.708
AGL6 Arabidopsis thaliana AT2G45650 D 0.708
Sb02g038780 Sorghum bicolor Sb02g038780 I 0.708
OPUNC04G20380 Oryza punctata OPUNC04G20380 I 0.708
OPUNC03G31590 Oryza punctata OPUNC03G31590 I 0.708
OBART02G28030 Oryza barthii OBART02G28030 I 0.708
OBART03G34520 Oryza barthii OBART03G34520 I 0.708
OBART04G22790 Oryza barthii OBART04G22790 I 0.708
OGLUM02G28590 Oryza glumaepatula OGLUM02G28590 I 0.708
OB04G29660 Oryza brachyantha OB04G29660 I 0.708
OB03G41490 Oryza brachyantha OB03G41490 I 0.708
MTR_6g464720 Medicago truncatula MTR_6g464720 I 0.708
MTR_8g033270 Medicago truncatula MTR_8g033270 I 0.708
OB02G35340 Oryza brachyantha OB02G35340 I 0.708
OGLUM04G22680 Oryza glumaepatula OGLUM04G22680 I 0.708
OLONG_003266 Oryza longistaminata OLONG_003266 I 0.708
ONIVA03G35980 Oryza nivara ONIVA03G35980 I 0.708
ONIVA04G21940 Oryza nivara ONIVA04G21940 I 0.708
OPUNC02G25740 Oryza punctata OPUNC02G25740 I 0.708
ONIVA02G31130 Oryza nivara ONIVA02G31130 I 0.708
OMERI04G19060 Oryza meridionalis OMERI04G19060 I 0.708
OLONG_010503 Oryza longistaminata OLONG_010503 I 0.708
OMERI02G27210 Oryza meridionalis OMERI02G27210 I 0.708
OMERI03G31620 Oryza meridionalis OMERI03G31620 I 0.708
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.708