CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TT16
(
Arabidopsis thaliana
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
AT5G23260
T252905_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Floral homeotic gene encoding a MADS domain transcription factor. Required for the specification of petal and stamen identities.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.729
0.729
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.729
0.729
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.729
0.729
FBP24_PETHY
M10997_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP24_01
0.729
0.729
A1YJE4_HORVD
M10900_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM10_01
0.708
0.708
MADS50
M10968_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G23260.1
MADS box
26
73
KIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEF
AT5G23260.2
MADS box
10
57
KIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEF
AT5G23260.3
MADS box
10
57
KIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEF
AT5G23260.4
MADS box
26
73
KIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEF
Links
Other
MADS box
family TFs
Other
Arabidopsis thaliana
TFs
349 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy