AT5G38620 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT5G38620 T252920_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G38620
M10931_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT5G38620_01
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G38620.1 MADS box 13 64

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AT5G49420 Arabidopsis thaliana AT5G49420 I 0.958
AGL83 Arabidopsis thaliana AT5G49490 I 0.875
Bostr.15774s0044 Boechera stricta Bostr.15774s0044 I 0.771
Carubv10022197m.g Capsella rubella Carubv10022197m.g I 0.729
Carubv10021917m.g Capsella rubella Carubv10021917m.g I 0.708