AGL98 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT5G39810 T252923_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL78
M10932_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G65330_01 		0.745 0.745
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G39810.1 MADS box 18 64

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL76 Arabidopsis thaliana AT5G40120 I 0.979
AGL81 Arabidopsis thaliana AT5G39750 I 0.979
Al_scaffold_0007_3741 Arabidopsis lyrata Al_scaffold_0007_3741 I 0.979
AGL77 Arabidopsis thaliana AT5G38740 I 0.979
scaffold_704060.1 Arabidopsis lyrata scaffold_704060.1 I 0.957
AGL75 Arabidopsis thaliana AT5G41200 I 0.955
fgenesh2_kg.7__3412__AT5G41200.1 Arabidopsis lyrata fgenesh2_kg.7__3412__AT5G41200.1 I 0.936
AGL105 Arabidopsis thaliana AT5G37415 I 0.923
AGL43 Arabidopsis thaliana AT5G40220 I 0.915
Bostr.10058s0014 Boechera stricta Bostr.10058s0014 I 0.830
Bostr.3751s0043 Boechera stricta Bostr.3751s0043 I 0.830
Bra025607 Brassica rapa Bra025607 N 0.814
Bostr.3751s0031 Boechera stricta Bostr.3751s0031 I 0.809
Bostr.3751s0030 Boechera stricta Bostr.3751s0030 I 0.792
Bostr.3751s0039 Boechera stricta Bostr.3751s0039 I 0.792
Bra025609 Brassica rapa Bra025609 I 0.787
Carubv10006654m.g Capsella rubella Carubv10006654m.g I 0.766
fgenesh2_kg.8__2584__AT5G65330.1 Arabidopsis lyrata fgenesh2_kg.8__2584__AT5G65330.1 I 0.745
Bo4g139640 Brassica oleracea Bo4g139640 N 0.745
Thhalv10028282m.g Eutrema salsugineum Thhalv10028282m.g I 0.745
Carubv10007591m.g Capsella rubella Carubv10007591m.g I 0.745
Bo00615s090 Brassica oleracea Bo00615s090 I 0.745
Bo4g139560 Brassica oleracea Bo4g139560 N 0.745
Bo4g139620 Brassica oleracea Bo4g139620 N 0.745
Bostr.3751s0025 Boechera stricta Bostr.3751s0025 I 0.729
AGL78 Arabidopsis thaliana AT5G65330 D 0.729
Thhalv10005313m.g Eutrema salsugineum Thhalv10005313m.g I 0.723
Bra031864 Brassica rapa Bra031864 I 0.723
AGL51 Arabidopsis thaliana AT4G02235 I 0.723
Bostr.0568s0255 Boechera stricta Bostr.0568s0255 I 0.723
Bra025619 Brassica rapa Bra025619 N 0.723
scaffold_602835.1 Arabidopsis lyrata scaffold_602835.1 N 0.702
Thhalv10028184m.g Eutrema salsugineum Thhalv10028184m.g I 0.702
AGL89 Arabidopsis thaliana AT5G27580 N 0.702
fgenesh2_kg.6__2748__AT5G27944.1 Arabidopsis lyrata fgenesh2_kg.6__2748__AT5G27944.1 N 0.702