CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AT5G55690
(
Arabidopsis thaliana
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
AT5G55690
T252932_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G55690.1
MADS box
10
55
RITNEKTRITTYKKRKACLYKKASEFSTLCGVDTCVIVYGPSRAGD
AT5G55690.2
MADS box
10
55
RITNEKTRITTYKKRKACLYKKASEFSTLCGVDTCVIVYGPSRAGD
Links
Other
MADS box
family TFs
Other
Arabidopsis thaliana
TFs
13 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
fgenesh1_pg.C_scaffold_8001596
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_8001596
N
0.932
Bostr.26833s0688
Boechera stricta
Bostr.26833s0688
N
0.932
Carubv10027564m.g
Capsella rubella
Carubv10027564m.g
N
0.932
Cagra.6942s0024
Capsella grandiflora
Cagra.6942s0024
N
0.932
Thhalv10015661m.g
Eutrema salsugineum
Thhalv10015661m.g
N
0.884
AGL82
Arabidopsis lyrata
scaffold_802501.1
N
0.750
Bra028965
Brassica rapa
Bra028965
N
0.750
Bra002611
Brassica rapa
Bra002611
N
0.750
AGL82
Arabidopsis thaliana
AT5G58890
N
0.733
Bo3g021400
Brassica oleracea
Bo3g021400
N
0.727
Cagra.0891s0086
Capsella grandiflora
Cagra.0891s0086
N
0.702
Carubv10027979m.g
Capsella rubella
Carubv10027979m.g
N
0.702