MAF5 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT5G65080 T252940_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Is upregulated during vernalization and regulates flowering time. Encodes MADS-domain protein. Two variants encoding proteins of 198 and 184 amino acids have been reported.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FLC
M06990_2.00
Arabidopsis thaliana
WWDMYNDWWWWGGAAASW

WSTTTCCWWWWHNRKHWW
Dap-seq
OMalley et al.(2016)
AGL25_col_a
0.787 0.787
FLC
M06991_2.00
Arabidopsis thaliana
WCYHAAAAWGGAAAS

STTTCCWTTTTDRGW
Dap-seq
OMalley et al.(2016)
AGL25_colamp_a
0.787 0.787
AGL27
M08145_2.00
Arabidopsis thaliana
MCMAAAATRGAAAB

VTTTCYATTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA1012.1
0.787 0.787
FLC
M08147_2.00
Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH

DDBTTTCYWWTTTBRGHWWNN
ChIP-seq
Mathelier et al.(2014)
MA0558.1
0.787 0.787
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G65080.2 MADS box 17 63
AT5G65080.3 MADS box 17 63

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.0917s0078 Capsella grandiflora Cagra.0917s0078 I 0.915
Bra031884 Brassica rapa Bra031884 I 0.915
Cagra.0917s0080 Capsella grandiflora Cagra.0917s0080 I 0.915
Thhalv10004949m.g Eutrema salsugineum Thhalv10004949m.g I 0.915
Carubv10028173m.g Capsella rubella Carubv10028173m.g I 0.894
Bo01054s010 Brassica oleracea Bo01054s010 I 0.894
Bra024351 Brassica rapa Bra024351 I 0.872
MAF4 Arabidopsis thaliana AT5G65070 I 0.854
MAF4 Arabidopsis lyrata Al_scaffold_0008_3055 I 0.854
Bra024350 Brassica rapa Bra024350 I 0.851
Bo3g100570 Brassica oleracea Bo3g100570 I 0.851
Bra031886 Brassica rapa Bra031886 I 0.830
Bo3g100540 Brassica oleracea Bo3g100540 I 0.830
Cagra.0450s0030 Capsella grandiflora Cagra.0450s0030 I 0.809
Carubv10020979m.g Capsella rubella Carubv10020979m.g I 0.809
Bra028599 Brassica rapa Bra028599 I 0.792
MAF1 Arabidopsis lyrata fgenesh2_kg.2__2000__AT1G77080.2 I 0.787
FLC Arabidopsis lyrata scaffold_601028.1 I 0.787
Bostr.0568s0285 Boechera stricta Bostr.0568s0285 I 0.787
Cagra.1085s0045 Capsella grandiflora Cagra.1085s0045 I 0.787
AGL31 Arabidopsis thaliana AT5G65050 I 0.787
Bostr.18351s0063 Boechera stricta Bostr.18351s0063 I 0.787
FLC Arabidopsis thaliana AT5G10140 D 0.787
fgenesh2_kg.233__4__AT5G65050.3 Arabidopsis lyrata fgenesh2_kg.233__4__AT5G65050.3 I 0.787
Bra006051 Brassica rapa Bra006051 I 0.787
AGL27 Arabidopsis thaliana AT1G77080 D 0.787
Thhalv10014726m.g Eutrema salsugineum Thhalv10014726m.g I 0.787
Bra009055 Brassica rapa Bra009055 I 0.787
Cagra.0917s0081 Capsella grandiflora Cagra.0917s0081 I 0.766
Bra031888 Brassica rapa Bra031888 I 0.766
Bo9g173370 Brassica oleracea Bo9g173370 I 0.766
MAF3 Arabidopsis thaliana AT5G65060 I 0.766
Bo3g005470 Brassica oleracea Bo3g005470 I 0.766
fgenesh2_kg.8__2543__AT5G65050.2 Arabidopsis lyrata fgenesh2_kg.8__2543__AT5G65050.2 I 0.766
GLYMA08G11110 Glycine max GLYMA08G11110 I 0.766
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.759
Bostr.13175s0088 Boechera stricta Bostr.13175s0088 I 0.750
Bo9g173400 Brassica oleracea Bo9g173400 I 0.745
Bo2g166500 Brassica oleracea Bo2g166500 I 0.745
Bo13628s010 Brassica oleracea Bo13628s010 I 0.745
Bo8g091790 Brassica oleracea Bo8g091790 I 0.723
GLYMA05G28130 Glycine max GLYMA05G28130 I 0.723
Bo3g024250 Brassica oleracea Bo3g024250 I 0.723
Bra007324 Brassica rapa Bra007324 I 0.723
SapurV1A.0658s0010 Salix purpurea SapurV1A.0658s0010 I 0.708
Bra022771 Brassica rapa Bra022771 I 0.708
SapurV1A.0228s0130 Salix purpurea SapurV1A.0228s0130 I 0.702
gene04563-v1.0-hybrid Fragaria vesca gene04563-v1.0-hybrid I 0.702
LPERR03G28970 Leersia perrieri LPERR03G28970 I 0.702
Bra003278 Brassica rapa Bra003278 I 0.702
Bo6g072840 Brassica oleracea Bo6g072840 I 0.702
OGLUM03G34160 Oryza glumaepatula OGLUM03G34160 I 0.702
OMERI03G31620 Oryza meridionalis OMERI03G31620 I 0.702
Solyc12g038510.1 Solanum lycopersicum Solyc12g038510.1 I 0.702
TCM_014661 Theobroma cacao TCM_014661 I 0.702