AGL78 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT5G65330 T252941_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL78
M10932_2.00		 Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G65330_01		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G65330.1 MADS box 5 52

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL51 Arabidopsis thaliana AT4G02235 I 0.979
fgenesh2_kg.8__2584__AT5G65330.1 Arabidopsis lyrata fgenesh2_kg.8__2584__AT5G65330.1 I 0.938
AGL52 Arabidopsis thaliana AT4G11250 I 0.896
Bostr.0568s0255 Boechera stricta Bostr.0568s0255 I 0.833
Bostr.10058s0014 Boechera stricta Bostr.10058s0014 I 0.812
Bostr.3751s0043 Boechera stricta Bostr.3751s0043 I 0.792
Bostr.3751s0030 Boechera stricta Bostr.3751s0030 I 0.771
Bostr.3751s0039 Boechera stricta Bostr.3751s0039 I 0.771
Bostr.3751s0031 Boechera stricta Bostr.3751s0031 I 0.771
AGL105 Arabidopsis thaliana AT5G37415 I 0.769
Al_scaffold_0007_3741 Arabidopsis lyrata Al_scaffold_0007_3741 I 0.750
Carubv10007591m.g Capsella rubella Carubv10007591m.g I 0.750
AGL77 Arabidopsis thaliana AT5G38740 I 0.750
AGL81 Arabidopsis thaliana AT5G39750 I 0.750
Thhalv10005313m.g Eutrema salsugineum Thhalv10005313m.g I 0.750
AGL76 Arabidopsis thaliana AT5G40120 I 0.750
Carubv10006654m.g Capsella rubella Carubv10006654m.g I 0.750
scaffold_704060.1 Arabidopsis lyrata scaffold_704060.1 I 0.729
Bo00615s090 Brassica oleracea Bo00615s090 I 0.729
AGL98 Arabidopsis thaliana AT5G39810 I 0.729
Bostr.3751s0025 Boechera stricta Bostr.3751s0025 I 0.729
Carubv10007456m.g Capsella rubella Carubv10007456m.g I 0.708
Cagra.1681s0033 Capsella grandiflora Cagra.1681s0033 I 0.708
fgenesh2_kg.7__3412__AT5G41200.1 Arabidopsis lyrata fgenesh2_kg.7__3412__AT5G41200.1 I 0.708
Bra031864 Brassica rapa Bra031864 I 0.708
Carubv10015986m.g Capsella rubella Carubv10015986m.g I 0.708
Bra025609 Brassica rapa Bra025609 I 0.702
Carubv10015354m.g Capsella rubella Carubv10015354m.g I 0.702