TF Information

BGIOSGA026939 *(Oryza indica)* MADS box
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00319 (SRF-TF)	IPR002100	BGIOSGA026939	T253017_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AGL16 M06987_2.00	Arabidopsis thaliana	TWCCHAAWDDGGWAA	TTWCCHHWTTDGGWA	Dap-seq OMalley et al.(2016) AGL16_col_a	0.812	0.812
AGL16 M06988_2.00	Arabidopsis thaliana	WDWNTTWCCHWAWWDGGAAAS	STTTCCHWWTWDGGWAANWHW	Dap-seq OMalley et al.(2016) AGL16_colamp_a	0.812	0.812
Q9FVN1_MAIZE M10982_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS2_03	0.812	0.812
Q9ATE8_PETHY M11011_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP21_01	0.771	0.771
Q40591_TOBAC M11002_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS1_03	0.771	0.771
SVP M06984_2.00	Arabidopsis thaliana	DDCCVAAWANGGHAA	TTDCCNTWTTBGGHH	Dap-seq OMalley et al.(2016) SVP_colamp_v3b	0.750	0.750
SVP M06985_2.00	Arabidopsis thaliana	CCMAAWANGGWAANW	WNTTWCCNTWTTKGG	Dap-seq OMalley et al.(2016) SVP_col_v3b	0.750	0.750
SVP M08424_2.00	Arabidopsis thaliana	NWWHCCMAAAADGGAAARHH	DDYTTTCCHTTTTKGGDWWN	ChIP-chip Mathelier et al.(2014) MA0555.1	0.750	0.750
SOC1 M08425_2.00	Arabidopsis thaliana	CCAAAAAWRGAAAND	HNTTTCYWTTTTTGG	ChIP-chip Mathelier et al.(2014) MA0554.1	0.750	0.750
SOC1 M10915_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL20_01	0.750	0.750
Q9ATE7_PETHY M11010_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP22_01	0.750	0.750
Q9ATE3_PETHY M11008_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP28_01	0.750	0.750
MADS50 M10968_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS50_01	0.750	0.750
AGL15 M06992_2.00	Arabidopsis thaliana	WNTTWCCHAAWDWRGAAAN	NTTTCYWHWTTDGGWAANW	Dap-seq OMalley et al.(2016) AGL15_col_a	0.729	0.729
AGL15 M06993_2.00	Arabidopsis thaliana	DNTTWCCHAAWDDRGAAANHH	DDNTTTCYHHWTTDGGWAANH	Dap-seq OMalley et al.(2016) AGL15_colamp_a	0.729	0.729
AG M02695_2.00	Arabidopsis thaliana	HTTWCCWWAWNDGGHADN	NHTDCCHNWTWWGGWAAD	SELEX Mathelier et al.(2014) MA0005.2	0.729	0.729
AG M10923_2.00	Arabidopsis thaliana	HTTWCCWWAWNDGGHWDN	NHTDCCHNWTWWGGWAAD	Transfac Matys et al.(2006) P$AG_01	0.729	0.729
AG M10924_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AG_02	0.729	0.729
AG M10925_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AG_03	0.729	0.729
AG_TOBAC M10995_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AG1_02	0.729	0.729
AGL15 M10927_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL15_01	0.729	0.729
AGL15 M10928_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL15_02	0.729	0.729
AG M10926_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AG_Q2	0.729	0.729
A1YJE4_HORVD M10900_2.00	Hordeum vulgare	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BM10_01	0.729	0.729
Q9ATE9_PETHY M11012_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP20_01	0.729	0.729
Q08711_PETHY M10999_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP6_01	0.729	0.729
O82698_MALDO M11021_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS10_01	0.729	0.729
O82699_MALDO M11022_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS11_01	0.729	0.729
MADS2 M10966_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS2_02	0.729	0.729
MADS3_ORYSJ M10963_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS3_01	0.729	0.729
AG_PETHY M10994_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS3_02	0.729	0.729
AGL42 M06995_2.00	Arabidopsis thaliana	RATGATG	CATCATY	Dap-seq OMalley et al.(2016) AGL42_col_a	0.708	0.708
AGL6 M06986_2.00	Arabidopsis thaliana	TTWCCHAAAAWRGWAANWW	WWNTTWCYWTTTTDGGWAA	Dap-seq OMalley et al.(2016) AGL6_col_a	0.708	0.708
Q9AR49_MAIZE M10980_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$M29_01	0.708	0.708
Q8VWZ3_MALDO M11025_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS14_02	0.708	0.708
Q8VWZ2_MALDO M11024_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS15_02	0.708	0.708
MAD17_ORYSJ M10961_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS17_01	0.708	0.708
MAD55_ORYSJ M10962_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS55_01	0.708	0.708
MADS6 M10967_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS6_01	0.708	0.708
Q84LI3_WHEAT M10979_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TAVRT1_01	0.708	0.708
Q4U0F1_WHEAT M10978_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TAVRT2_01	0.708	0.708
O82128_WHEAT M10965_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WAP1_01	0.708	0.708
For this family, TFs with SR scores > 0.700* will likely have a similar motif*