Bo01054s010 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo01054s010 T253042_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FLC
M06990_2.00
Arabidopsis thaliana
WWDMYNDWWWWGGAAASW

WSTTTCCWWWWHNRKHWW
Dap-seq
OMalley et al.(2016)
AGL25_col_a
0.830 0.830
FLC
M06991_2.00
Arabidopsis thaliana
WCYHAAAAWGGAAAS

STTTCCWTTTTDRGW
Dap-seq
OMalley et al.(2016)
AGL25_colamp_a
0.830 0.830
FLC
M08147_2.00
Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH

DDBTTTCYWWTTTBRGHWWNN
ChIP-seq
Mathelier et al.(2014)
MA0558.1
0.830 0.830
AGL27
M08145_2.00
Arabidopsis thaliana
MCMAAAATRGAAAB

VTTTCYATTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA1012.1
0.787 0.787
AGL6
M06986_2.00
Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW

WWNTTWCYWTTTTDGGWAA
Dap-seq
OMalley et al.(2016)
AGL6_col_a
0.723 0.723
Q9ATF1_PETHY
M11013_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP9_01
0.723 0.723
MAD17_ORYSJ
M10961_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS17_01
0.723 0.723
Q9ST54_MALDO
M11029_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_04
0.723 0.723
MADS6
M10967_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS6_01
0.723 0.723
O82697_MALDO
M11020_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS7_01
0.723 0.723
AGL3
M02693_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN

NNWNCYWWWWWTGGNWHB
SELEX
Mathelier et al.(2014)
MA0001.2
0.702 0.702
SEP1
M02696_2.00
Arabidopsis thaliana
NDWNCCAWWWWTRGHAWB

VWTDCYAWWWWTGGNWHN
SELEX
Mathelier et al.(2014)
MA0584.1
0.702 0.702
SEP3
M08143_2.00
Arabidopsis thaliana
CCAAAAAWRGN

NCYWTTTTTGG
ChIP-seq
Mathelier et al.(2014)
MA0563.1
0.702 0.702
SEP1
M10929_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL2_01
0.702 0.702
SEP1
M10930_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL2_02
0.702 0.702
AGL3
M10908_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN

NNWNCYWWWWWTGGNWHB
Transfac
Matys et al.(2006)
P$AGL3_01
0.702 0.702
AGL3
M10909_2.00
Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN

NNWDCYAWWWWTGGNAHN
Transfac
Matys et al.(2006)
P$AGL3_02
0.702 0.702
AGL3
M10910_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL3_03
0.702 0.702
SEP3
M10902_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL9_01
0.702 0.702
AGL9_PETHY
M10993_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP2_01
0.702 0.702
Q9ATE6_PETHY
M11009_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP23_01
0.702 0.702
Q9ATF3_PETHY
M11015_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP4_01
0.702 0.702
Q9ATF2_PETHY
M11014_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP5_01
0.702 0.702
O82084_MALDO
M11018_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_01
0.702 0.702
O82699_MALDO
M11022_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_01
0.702 0.702
Q6UGQ8_PETHY
M11005_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS12_01
0.702 0.702
Q9LM09_TOBAC
M11016_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS4_01
0.702 0.702
MADS7
M10975_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS7_02
0.702 0.702
MADS8
M10976_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS8_01
0.702 0.702
Q9SBA6_MALDO
M11028_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS8_02
0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo01054s010.1 MADS box 10 56

Links

Other MADS box family TFs
Other Brassica oleracea TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra031884 Brassica rapa Bra031884 I 0.979
Thhalv10004949m.g Eutrema salsugineum Thhalv10004949m.g I 0.915
Cagra.0917s0080 Capsella grandiflora Cagra.0917s0080 I 0.896
MAF5 Arabidopsis thaliana AT5G65080 I 0.894
Bra024351 Brassica rapa Bra024351 I 0.894
Carubv10028173m.g Capsella rubella Carubv10028173m.g I 0.875
Cagra.0917s0078 Capsella grandiflora Cagra.0917s0078 I 0.875
Bra024350 Brassica rapa Bra024350 I 0.872
Bo3g100570 Brassica oleracea Bo3g100570 I 0.872
Bra031886 Brassica rapa Bra031886 I 0.872
MAF4 Arabidopsis thaliana AT5G65070 I 0.854
MAF4 Arabidopsis lyrata Al_scaffold_0008_3055 I 0.854
Bo3g100540 Brassica oleracea Bo3g100540 I 0.851
Bra009055 Brassica rapa Bra009055 I 0.812
FLC Arabidopsis lyrata scaffold_601028.1 I 0.812
Cagra.1085s0045 Capsella grandiflora Cagra.1085s0045 I 0.812
FLC Arabidopsis thaliana AT5G10140 D 0.812
Bra006051 Brassica rapa Bra006051 I 0.812
Thhalv10014726m.g Eutrema salsugineum Thhalv10014726m.g I 0.812
Bostr.18351s0063 Boechera stricta Bostr.18351s0063 I 0.812
Bo3g005470 Brassica oleracea Bo3g005470 I 0.809
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.793
Bostr.13175s0088 Boechera stricta Bostr.13175s0088 I 0.792
Bo9g173370 Brassica oleracea Bo9g173370 I 0.792
Bra028599 Brassica rapa Bra028599 I 0.792
GLYMA08G11110 Glycine max GLYMA08G11110 I 0.787
Bra031888 Brassica rapa Bra031888 I 0.787
MAF1 Arabidopsis lyrata fgenesh2_kg.2__2000__AT1G77080.2 I 0.787
fgenesh2_kg.8__2543__AT5G65050.2 Arabidopsis lyrata fgenesh2_kg.8__2543__AT5G65050.2 I 0.787
AGL31 Arabidopsis thaliana AT5G65050 I 0.787
AGL27 Arabidopsis thaliana AT1G77080 D 0.787
Bo13628s010 Brassica oleracea Bo13628s010 I 0.771
Bo9g173400 Brassica oleracea Bo9g173400 I 0.771
Bra022771 Brassica rapa Bra022771 I 0.771
fgenesh2_kg.233__4__AT5G65050.3 Arabidopsis lyrata fgenesh2_kg.233__4__AT5G65050.3 I 0.766
Bo2g166500 Brassica oleracea Bo2g166500 I 0.766
Cagra.0450s0030 Capsella grandiflora Cagra.0450s0030 I 0.766
Bostr.0568s0285 Boechera stricta Bostr.0568s0285 I 0.766
Carubv10020979m.g Capsella rubella Carubv10020979m.g I 0.766
Bo3g024250 Brassica oleracea Bo3g024250 I 0.750
SapurV1A.0173s0350 Salix purpurea SapurV1A.0173s0350 I 0.750
SapurV1A.1717s0010 Salix purpurea SapurV1A.1717s0010 I 0.750
MAF3 Arabidopsis thaliana AT5G65060 I 0.745
SapurV1A.1446s0020 Salix purpurea SapurV1A.1446s0020 I 0.745
GLYMA05G28130 Glycine max GLYMA05G28130 I 0.745
Cagra.0917s0081 Capsella grandiflora Cagra.0917s0081 I 0.745
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.733
POPTR_0003s16870 Populus trichocarpa POPTR_0003s16870 I 0.729
Solyc01g093960.2 Solanum lycopersicum Solyc01g093960.2 I 0.729
SapurV1A.0228s0130 Salix purpurea SapurV1A.0228s0130 I 0.729
POPTR_0003s16840 Populus trichocarpa POPTR_0003s16840 I 0.729
SapurV1A.2188s0030 Salix purpurea SapurV1A.2188s0030 I 0.729
POPTR_0001s13660 Populus trichocarpa POPTR_0001s13660 I 0.729
SapurV1A.5743s0010 Salix purpurea SapurV1A.5743s0010 I 0.729
SapurV1A.0173s0340 Salix purpurea SapurV1A.0173s0340 I 0.729
SapurV1A.0833s0010 Salix purpurea SapurV1A.0833s0010 I 0.729
Eucgr.E01330 Eucalyptus grandis Eucgr.E01330 I 0.729
PGSC0003DMG400000136 Solanum tuberosum PGSC0003DMG400000136 I 0.729
SapurV1A.0658s0010 Salix purpurea SapurV1A.0658s0010 I 0.729
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.727
Eucgr.E00516 Eucalyptus grandis Eucgr.E00516 I 0.723
Pm007034 Prunus mume Pm007034 I 0.723
Bra025126 Brassica rapa Bra025126 I 0.723
PRUPE_ppa010679mg Prunus persica PRUPE_ppa010679mg I 0.723
Thhalv10005413m.g Eutrema salsugineum Thhalv10005413m.g I 0.721
Pm019409 Prunus mume Pm019409 I 0.708
Aquca_032_00047 Aquilegia coerulea Aquca_032_00047 I 0.708
30174.m008934 Ricinus communis 30174.m008934 I 0.708
Q9ATF1_PETHY Petunia x hybrida Q9ATF1_PETHY D 0.708
mgf001713m Mimulus guttatus mgf001713m I 0.708
mgf007278m Mimulus guttatus mgf007278m I 0.708
Cagra.0050s0135 Capsella grandiflora Cagra.0050s0135 I 0.708
Bostr.25993s0209 Boechera stricta Bostr.25993s0209 I 0.708
Pm025027 Prunus mume Pm025027 I 0.708
SapurV1A.0068s0650 Salix purpurea SapurV1A.0068s0650 I 0.708
Q9ST54_MALDO Malus domestica Q9ST54_MALDO D 0.708
Pavir.Ab02707 Panicum virgatum Pavir.Ab02707 I 0.708
Pavir.Aa00924 Panicum virgatum Pavir.Aa00924 I 0.708
orange1.1g037149m.g Citrus sinensis orange1.1g037149m.g I 0.708
SapurV1A.0008s0740 Salix purpurea SapurV1A.0008s0740 I 0.708
SapurV1A.0578s0120 Salix purpurea SapurV1A.0578s0120 I 0.708
PDK_20s1538871g001 Phoenix dactylifera PDK_20s1538871g001 I 0.708
chr4.CM0126.630.nc Lotus japonicus chr4.CM0126.630.nc I 0.708
SapurV1A.4216s0020 Salix purpurea SapurV1A.4216s0020 I 0.708
orange1.1g026043m.g Citrus sinensis orange1.1g026043m.g I 0.708
O82697_MALDO Malus domestica O82697_MALDO D 0.708
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.708
Ciclev10032572m.g Citrus clementina Ciclev10032572m.g I 0.708
Ciclev10021911m.g Citrus clementina Ciclev10021911m.g I 0.708
evm.TU.supercontig_414.3 Carica papaya evm.TU.supercontig_414.3 I 0.708
gene19428-v1.0-hybrid Fragaria vesca gene19428-v1.0-hybrid I 0.708
MDP0000574222 Malus domestica MDP0000574222 I 0.708
MDP0000326390 Malus domestica MDP0000326390 I 0.708
Gorai.007G093700 Gossypium raimondii Gorai.007G093700 I 0.708
Carubv10023910m.g Capsella rubella Carubv10023910m.g I 0.708
PRUPE_ppa010391mg Prunus persica PRUPE_ppa010391mg I 0.708
MTR_8g033270 Medicago truncatula MTR_8g033270 I 0.708
OB02G35340 Oryza brachyantha OB02G35340 I 0.708
MLOC_52944 Hordeum vulgare MLOC_52944 I 0.708
MAD17_ORYSJ Oryza sativa MAD17_ORYSJ D 0.708
LPERR02G22830 Leersia perrieri LPERR02G22830 I 0.708
LPERR04G18560 Leersia perrieri LPERR04G18560 I 0.708
OB04G29660 Oryza brachyantha OB04G29660 I 0.708
OBART02G28030 Oryza barthii OBART02G28030 I 0.708
OLONG_003266 Oryza longistaminata OLONG_003266 I 0.708
OMERI02G27210 Oryza meridionalis OMERI02G27210 I 0.708
OGLUM04G22680 Oryza glumaepatula OGLUM04G22680 I 0.708
OGLUM02G28590 Oryza glumaepatula OGLUM02G28590 I 0.708
OBART04G22790 Oryza barthii OBART04G22790 I 0.708
GSMUA_Achr4G30120_001 Musa acuminata GSMUA_Achr4G30120_001 I 0.708
GSMUA_Achr2G10250_001 Musa acuminata GSMUA_Achr2G10250_001 I 0.708
Bra007324 Brassica rapa Bra007324 I 0.708
BRADI3G51800 Brachypodium distachyon BRADI3G51800 I 0.708
Bo8g091790 Brassica oleracea Bo8g091790 I 0.708
BGIOSGA016980 Oryza indica BGIOSGA016980 I 0.708
AGL6 Arabidopsis thaliana AT2G45650 D 0.708
BGIOSGA008820 Oryza indica BGIOSGA008820 I 0.708
F775_31247 Aegilops tauschii F775_31247 I 0.708
AGL6 Arabidopsis lyrata fgenesh2_kg.4__2761__AT2G45650.1 I 0.708
GRMZM2G160565 Zea mays GRMZM2G160565 I 0.708
GSMUA_Achr11G07760_001 Musa acuminata GSMUA_Achr11G07760_001 I 0.708
GLYMA07G08890 Glycine max GLYMA07G08890 I 0.708
GLYMA03G02210 Glycine max GLYMA03G02210 I 0.708
GLYMA03G02191 Glycine max GLYMA03G02191 I 0.708
OMERI04G19060 Oryza meridionalis OMERI04G19060 I 0.708
ONIVA02G31130 Oryza nivara ONIVA02G31130 I 0.708
Sb04g031750 Sorghum bicolor Sb04g031750 I 0.708
Si018160m.g Setaria italica Si018160m.g I 0.708
PRUPE_ppa022942mg Prunus persica PRUPE_ppa022942mg I 0.708
POPTR_0006s04730 Populus trichocarpa POPTR_0006s04730 I 0.708
VIT_15s0048g01270 Vitis vinifera VIT_15s0048g01270 I 0.708
TCM_005458 Theobroma cacao TCM_005458 I 0.708
TCM_014661 Theobroma cacao TCM_014661 I 0.708
TRIUR3_22246 Triticum urartu TRIUR3_22246 I 0.708
Traes_6DL_5B1D4DBF5 Triticum aestivum Traes_6DL_5B1D4DBF5 I 0.708
Traes_6BL_7C6B17284 Triticum aestivum Traes_6BL_7C6B17284 I 0.708
Traes_6AL_1F7DAC5FA Triticum aestivum Traes_6AL_1F7DAC5FA I 0.708
MADS6 Oryza sativa OS02G0682200 D 0.708
OS04G0580700 Oryza sativa OS04G0580700 I 0.708
OPUNC02G25740 Oryza punctata OPUNC02G25740 I 0.708
ORUFI04G24470 Oryza rufipogon ORUFI04G24470 I 0.708
ONIVA04G21940 Oryza nivara ONIVA04G21940 I 0.708
OPUNC04G20380 Oryza punctata OPUNC04G20380 I 0.708
ORGLA02G0240800 Oryza glaberrima ORGLA02G0240800 I 0.708
ORUFI02G29550 Oryza rufipogon ORUFI02G29550 I 0.708
ORGLA04G0197900 Oryza glaberrima ORGLA04G0197900 I 0.708
Traes_5BS_A19FD8E34 Triticum aestivum Traes_5BS_A19FD8E34 I 0.705
Eucgr.I02048 Eucalyptus grandis Eucgr.I02048 I 0.702
VIT_15s0048g01240 Vitis vinifera VIT_15s0048g01240 I 0.702
Q9ATF2_PETHY Petunia x hybrida Q9ATF2_PETHY D 0.702
Eucgr.J03007 Eucalyptus grandis Eucgr.J03007 I 0.702
Eucgr.B00633 Eucalyptus grandis Eucgr.B00633 I 0.702
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.702
Lus10014143.g Linum usitatissimum Lus10014143.g I 0.702
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.702
ONIVA04G11980 Oryza nivara ONIVA04G11980 I 0.700