Bo3g005470 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo3g005470 T253084_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.917 0.917
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.917 0.917
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.917 0.917
AGL27
M08145_2.00 		Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA1012.1 		0.750 0.750
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.708 0.708
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.708 0.708
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.708 0.708
AGL3
M02693_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 SELEX
Mathelier et al.(2014)
MA0001.2 		0.708 0.708
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.708 0.708
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.708 0.708
AGL3
M10908_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 Transfac
Matys et al.(2006)
P$AGL3_01 		0.708 0.708
AGL3
M10909_2.00 		Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN
NNWDCYAWWWWTGGNAHN		 Transfac
Matys et al.(2006)
P$AGL3_02 		0.708 0.708
AGL3
M10910_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL3_03 		0.708 0.708
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.708 0.708
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.708 0.708
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g005470.1 MADS box 10 57

Links

Other MADS box family TFs
Other Brassica oleracea TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra006051 Brassica rapa Bra006051 I 0.958
Thhalv10014726m.g Eutrema salsugineum Thhalv10014726m.g I 0.917
FLC Arabidopsis lyrata scaffold_601028.1 I 0.917
Bostr.18351s0063 Boechera stricta Bostr.18351s0063 I 0.917
Bra009055 Brassica rapa Bra009055 I 0.917
Cagra.1085s0045 Capsella grandiflora Cagra.1085s0045 I 0.917
FLC Arabidopsis thaliana AT5G10140 D 0.917
Bo9g173370 Brassica oleracea Bo9g173370 I 0.896
Bostr.13175s0088 Boechera stricta Bostr.13175s0088 I 0.896
Bra028599 Brassica rapa Bra028599 I 0.896
Bo13628s010 Brassica oleracea Bo13628s010 I 0.875
Bo9g173400 Brassica oleracea Bo9g173400 I 0.875
fgenesh2_kg.8__2543__AT5G65050.2 Arabidopsis lyrata fgenesh2_kg.8__2543__AT5G65050.2 I 0.851
AGL31 Arabidopsis thaliana AT5G65050 I 0.830
Bo3g024250 Brassica oleracea Bo3g024250 I 0.812
Bostr.0568s0285 Boechera stricta Bostr.0568s0285 I 0.809
Bra031888 Brassica rapa Bra031888 I 0.809
Bo01054s010 Brassica oleracea Bo01054s010 I 0.809
fgenesh2_kg.233__4__AT5G65050.3 Arabidopsis lyrata fgenesh2_kg.233__4__AT5G65050.3 I 0.809
Thhalv10004949m.g Eutrema salsugineum Thhalv10004949m.g I 0.809
Bra022771 Brassica rapa Bra022771 I 0.792
Cagra.0917s0081 Capsella grandiflora Cagra.0917s0081 I 0.787
MAF3 Arabidopsis thaliana AT5G65060 I 0.787
Bra024350 Brassica rapa Bra024350 I 0.787
Bo3g100570 Brassica oleracea Bo3g100570 I 0.787
Cagra.0450s0030 Capsella grandiflora Cagra.0450s0030 I 0.787
Bra031884 Brassica rapa Bra031884 I 0.787
Carubv10020979m.g Capsella rubella Carubv10020979m.g I 0.787
Bra024351 Brassica rapa Bra024351 I 0.787
SapurV1A.0173s0350 Salix purpurea SapurV1A.0173s0350 I 0.771
Cagra.0917s0080 Capsella grandiflora Cagra.0917s0080 I 0.771
Bo2g166500 Brassica oleracea Bo2g166500 I 0.771
SapurV1A.1717s0010 Salix purpurea SapurV1A.1717s0010 I 0.771
Eucgr.K02711 Eucalyptus grandis Eucgr.K02711 I 0.771
Cagra.0917s0078 Capsella grandiflora Cagra.0917s0078 I 0.771
Bra031886 Brassica rapa Bra031886 I 0.766
AGL27 Arabidopsis thaliana AT1G77080 D 0.766
Bo3g100540 Brassica oleracea Bo3g100540 I 0.766
MAF5 Arabidopsis thaliana AT5G65080 I 0.766
POPTR_0003s16870 Populus trichocarpa POPTR_0003s16870 I 0.750
GSMUA_Achr1G24070_001 Musa acuminata GSMUA_Achr1G24070_001 I 0.750
SapurV1A.0173s0340 Salix purpurea SapurV1A.0173s0340 I 0.750
TCM_008716 Theobroma cacao TCM_008716 I 0.750
Carubv10028173m.g Capsella rubella Carubv10028173m.g I 0.750
POPTR_0003s16840 Populus trichocarpa POPTR_0003s16840 I 0.750
SapurV1A.2188s0030 Salix purpurea SapurV1A.2188s0030 I 0.750
SapurV1A.5743s0010 Salix purpurea SapurV1A.5743s0010 I 0.750
SapurV1A.1446s0020 Salix purpurea SapurV1A.1446s0020 I 0.750
MAF1 Arabidopsis lyrata fgenesh2_kg.2__2000__AT1G77080.2 I 0.750
SapurV1A.0658s0010 Salix purpurea SapurV1A.0658s0010 I 0.750
SapurV1A.0833s0010 Salix purpurea SapurV1A.0833s0010 I 0.750
Thhalv10005413m.g Eutrema salsugineum Thhalv10005413m.g I 0.744
MAF4 Arabidopsis thaliana AT5G65070 I 0.729
PGSC0003DMG400022748 Solanum tuberosum PGSC0003DMG400022748 I 0.729
Sb06g026300 Sorghum bicolor Sb06g026300 I 0.729
POPTR_0006s04730 Populus trichocarpa POPTR_0006s04730 I 0.729
Thhalv10006419m.g Eutrema salsugineum Thhalv10006419m.g I 0.729
PRUPE_ppa022942mg Prunus persica PRUPE_ppa022942mg I 0.729
Lus10036543.g Linum usitatissimum Lus10036543.g I 0.729
MAF4 Arabidopsis lyrata Al_scaffold_0008_3055 I 0.729
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.729
Lus10015766.g Linum usitatissimum Lus10015766.g I 0.729
Lus10037039.g Linum usitatissimum Lus10037039.g I 0.729
PK14825.1 Cannabis sativa PK14825.1 I 0.729
Bo4g024840 Brassica oleracea Bo4g024840 I 0.729
Thhalv10001597m.g Eutrema salsugineum Thhalv10001597m.g I 0.729
Solyc08g080100.2 Solanum lycopersicum Solyc08g080100.2 I 0.729
Bra004927 Brassica rapa Bra004927 I 0.729
SapurV1A.4216s0020 Salix purpurea SapurV1A.4216s0020 I 0.729
LPERR03G01640 Leersia perrieri LPERR03G01640 I 0.729
cassava28648.m1 Manihot esculenta cassava28648.m1 I 0.729
Si010898m.g Setaria italica Si010898m.g I 0.729
Pavir.Ia04538 Panicum virgatum Pavir.Ia04538 I 0.729
GLYMA03G02191 Glycine max GLYMA03G02191 I 0.729
SapurV1A.0008s0740 Salix purpurea SapurV1A.0008s0740 I 0.729
POPTR_0001s13660 Populus trichocarpa POPTR_0001s13660 I 0.729
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.727
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.724
GLYMA08G11110 Glycine max GLYMA08G11110 I 0.723
GLYMA05G28130 Glycine max GLYMA05G28130 I 0.723
Aquca_003_00853 Aquilegia coerulea Aquca_003_00853 I 0.708
Pm018089 Prunus mume Pm018089 I 0.708
Aquca_005_00633 Aquilegia coerulea Aquca_005_00633 I 0.708
Pm019409 Prunus mume Pm019409 I 0.708
Aquca_013_00471 Aquilegia coerulea Aquca_013_00471 I 0.708
Ca_06280 Cicer arietinum Ca_06280 I 0.708
Ca_16423 Cicer arietinum Ca_16423 I 0.708
Bostr.0556s0185 Boechera stricta Bostr.0556s0185 I 0.708
Cla002664 Citrullus lanatus Cla002664 I 0.708
30174.m008934 Ricinus communis 30174.m008934 I 0.708
cassava15798.m1 Manihot esculenta cassava15798.m1 I 0.708
mgf007278m Mimulus guttatus mgf007278m I 0.708
mgf006616m Mimulus guttatus mgf006616m I 0.708
Cucsa.392160 Cucumis sativus Cucsa.392160 I 0.708
mgf001713m Mimulus guttatus mgf001713m I 0.708
Cucsa.257910 Cucumis sativus Cucsa.257910 I 0.708
cassava40221.m1 Manihot esculenta cassava40221.m1 I 0.708
mgf022278m Mimulus guttatus mgf022278m I 0.708
cassava3099.m1 Manihot esculenta cassava3099.m1 I 0.708
mgf021705m Mimulus guttatus mgf021705m I 0.708
mgf004211m Mimulus guttatus mgf004211m I 0.708
Pavir.Aa00924 Panicum virgatum Pavir.Aa00924 I 0.708
Pavir.Ib00012 Panicum virgatum Pavir.Ib00012 I 0.708
SapurV1A.0045s0580 Salix purpurea SapurV1A.0045s0580 I 0.708
SapurV1A.0068s0650 Salix purpurea SapurV1A.0068s0650 I 0.708
Pavir.Gb01001 Panicum virgatum Pavir.Gb01001 I 0.708
Pavir.Ab02707 Panicum virgatum Pavir.Ab02707 I 0.708
VIT_17s0000g05000 Vitis vinifera VIT_17s0000g05000 I 0.708
Pavir.Ab00058 Panicum virgatum Pavir.Ab00058 I 0.708
SapurV1A.0173s0300 Salix purpurea SapurV1A.0173s0300 I 0.708
SapurV1A.0173s0320 Salix purpurea SapurV1A.0173s0320 I 0.708
Thhalv10004767m.g Eutrema salsugineum Thhalv10004767m.g I 0.708
PK01844.1 Cannabis sativa PK01844.1 I 0.708
PDK_20s1538871g001 Phoenix dactylifera PDK_20s1538871g001 I 0.708
SapurV1A.0578s0130 Salix purpurea SapurV1A.0578s0130 I 0.708
SapurV1A.0578s0120 Salix purpurea SapurV1A.0578s0120 I 0.708
SapurV1A.0228s0130 Salix purpurea SapurV1A.0228s0130 I 0.708
SapurV1A.0282s0240 Salix purpurea SapurV1A.0282s0240 I 0.708
orange1.1g037149m.g Citrus sinensis orange1.1g037149m.g I 0.708
MDP0000574222 Malus domestica MDP0000574222 I 0.708
Carubv10023910m.g Capsella rubella Carubv10023910m.g I 0.708
Ciclev10021911m.g Citrus clementina Ciclev10021911m.g I 0.708
Eucgr.E01330 Eucalyptus grandis Eucgr.E01330 I 0.708
Carubv10017787m.g Capsella rubella Carubv10017787m.g I 0.708
Cagra.0447s0009 Capsella grandiflora Cagra.0447s0009 I 0.708
Bostr.2902s0113 Boechera stricta Bostr.2902s0113 I 0.708
Cagra.0050s0135 Capsella grandiflora Cagra.0050s0135 I 0.708
Eucgr.H04618 Eucalyptus grandis Eucgr.H04618 I 0.708
evm.TU.supercontig_414.3 Carica papaya evm.TU.supercontig_414.3 I 0.708
MDP0000144516 Malus domestica MDP0000144516 I 0.708
MDP0000326906 Malus domestica MDP0000326906 I 0.708
MDP0000135652 Malus domestica MDP0000135652 I 0.708
Gorai.007G093700 Gossypium raimondii Gorai.007G093700 I 0.708
gene19428-v1.0-hybrid Fragaria vesca gene19428-v1.0-hybrid I 0.708
Gorai.001G172200 Gossypium raimondii Gorai.001G172200 I 0.708
Bostr.25993s0209 Boechera stricta Bostr.25993s0209 I 0.708
POPTR_0003s16820 Populus trichocarpa POPTR_0003s16820 I 0.708
GSMUA_Achr8G12280_001 Musa acuminata GSMUA_Achr8G12280_001 I 0.708
LPERR02G22830 Leersia perrieri LPERR02G22830 I 0.708
LPERR04G18560 Leersia perrieri LPERR04G18560 I 0.708
MAD17_ORYSJ Oryza sativa MAD17_ORYSJ D 0.708
GSMUA_Achr5G10250_001 Musa acuminata GSMUA_Achr5G10250_001 I 0.708
GSMUA_Achr4G30120_001 Musa acuminata GSMUA_Achr4G30120_001 I 0.708
GSMUA_Achr11G07760_001 Musa acuminata GSMUA_Achr11G07760_001 I 0.708
GSMUA_Achr1G24060_001 Musa acuminata GSMUA_Achr1G24060_001 I 0.708
GSMUA_Achr2G04350_001 Musa acuminata GSMUA_Achr2G04350_001 I 0.708
GSMUA_Achr2G10250_001 Musa acuminata GSMUA_Achr2G10250_001 I 0.708
MLOC_52944 Hordeum vulgare MLOC_52944 I 0.708
MTR_4g102530 Medicago truncatula MTR_4g102530 I 0.708
OB07G27140 Oryza brachyantha OB07G27140 I 0.708
OBART02G28030 Oryza barthii OBART02G28030 I 0.708
OBART03G01800 Oryza barthii OBART03G01800 I 0.708
OBART04G22790 Oryza barthii OBART04G22790 I 0.708
OB04G29660 Oryza brachyantha OB04G29660 I 0.708
OB03G11760 Oryza brachyantha OB03G11760 I 0.708
MTR_7g075850 Medicago truncatula MTR_7g075850 I 0.708
MTR_8g033270 Medicago truncatula MTR_8g033270 I 0.708
OB02G35340 Oryza brachyantha OB02G35340 I 0.708
GSMUA_Achr10G06580_001 Musa acuminata GSMUA_Achr10G06580_001 I 0.708
GRMZM2G171365 Zea mays GRMZM2G171365 I 0.708
BGIOSGA026939 Oryza indica BGIOSGA026939 I 0.708
Bo2g137070 Brassica oleracea Bo2g137070 I 0.708
Bo7g081460 Brassica oleracea Bo7g081460 I 0.708
Bo9g074400 Brassica oleracea Bo9g074400 I 0.708
BGIOSGA016980 Oryza indica BGIOSGA016980 I 0.708
BGIOSGA008820 Oryza indica BGIOSGA008820 I 0.708
AGL3 Arabidopsis thaliana AT2G03710 D 0.708
AGL6 Arabidopsis thaliana AT2G45650 D 0.708
AGL15 Arabidopsis thaliana AT5G13790 D 0.708
Bra000392 Brassica rapa Bra000392 I 0.708
Bra026543 Brassica rapa Bra026543 I 0.708
GLYMA03G02210 Glycine max GLYMA03G02210 I 0.708
GLYMA07G08890 Glycine max GLYMA07G08890 I 0.708
GRMZM2G026223 Zea mays GRMZM2G026223 I 0.708
GRMZM2G160565 Zea mays GRMZM2G160565 I 0.708
AGL15 Arabidopsis lyrata fgenesh2_kg.6__1336__AT5G13790.1 I 0.708
AGL6 Arabidopsis lyrata fgenesh2_kg.4__2761__AT2G45650.1 I 0.708
BRADI3G51800 Brachypodium distachyon BRADI3G51800 I 0.708
BRADI4G06867 Brachypodium distachyon BRADI4G06867 I 0.708
F775_31247 Aegilops tauschii F775_31247 I 0.708
OGLUM02G28590 Oryza glumaepatula OGLUM02G28590 I 0.708
OGLUM03G01750 Oryza glumaepatula OGLUM03G01750 I 0.708
PGSC0003DMG400028359 Solanum tuberosum PGSC0003DMG400028359 I 0.708
POPTR_0001s08510 Populus trichocarpa POPTR_0001s08510 I 0.708
SEP4 Arabidopsis lyrata Al_scaffold_0005_309 I 0.708
POPTR_0003s16850 Populus trichocarpa POPTR_0003s16850 I 0.708
PGSC0003DMG400001377 Solanum tuberosum PGSC0003DMG400001377 I 0.708
OS04G0580700 Oryza sativa OS04G0580700 I 0.708
ORUFI04G24470 Oryza rufipogon ORUFI04G24470 I 0.708
MADS6 Oryza sativa OS02G0682200 D 0.708
MADS50 Oryza sativa OS03G0122600 D 0.708
POPTR_0014s07020 Populus trichocarpa POPTR_0014s07020 I 0.708
PRUPE_ppa014428mg Prunus persica PRUPE_ppa014428mg I 0.708
Traes_6AL_1F7DAC5FA Triticum aestivum Traes_6AL_1F7DAC5FA I 0.708
Traes_6BL_7C6B17284 Triticum aestivum Traes_6BL_7C6B17284 I 0.708
Traes_6DL_5B1D4DBF5 Triticum aestivum Traes_6DL_5B1D4DBF5 I 0.708
TRIUR3_22246 Triticum urartu TRIUR3_22246 I 0.708
TCM_005458 Theobroma cacao TCM_005458 I 0.708
Solyc02g089200.2 Solanum lycopersicum Solyc02g089200.2 I 0.708
Sb04g031750 Sorghum bicolor Sb04g031750 I 0.708
Si018160m.g Setaria italica Si018160m.g I 0.708
Si038257m.g Setaria italica Si038257m.g I 0.708
ORUFI03G01510 Oryza rufipogon ORUFI03G01510 I 0.708
ORUFI02G29550 Oryza rufipogon ORUFI02G29550 I 0.708
OLONG_011763 Oryza longistaminata OLONG_011763 I 0.708
OMERI02G27210 Oryza meridionalis OMERI02G27210 I 0.708
OMERI03G01730 Oryza meridionalis OMERI03G01730 I 0.708
OMERI04G19060 Oryza meridionalis OMERI04G19060 I 0.708
OLONG_010918 Oryza longistaminata OLONG_010918 I 0.708
OLONG_005831 Oryza longistaminata OLONG_005831 I 0.708
OGLUM04G22680 Oryza glumaepatula OGLUM04G22680 I 0.708
OGLUM08G16360 Oryza glumaepatula OGLUM08G16360 I 0.708
OLONG_003266 Oryza longistaminata OLONG_003266 I 0.708
ONIVA02G31130 Oryza nivara ONIVA02G31130 I 0.708
ONIVA03G01420 Oryza nivara ONIVA03G01420 I 0.708
OPUNC08G13690 Oryza punctata OPUNC08G13690 I 0.708
ORGLA02G0240800 Oryza glaberrima ORGLA02G0240800 I 0.708
ORGLA03G0015400 Oryza glaberrima ORGLA03G0015400 I 0.708
ORGLA04G0197900 Oryza glaberrima ORGLA04G0197900 I 0.708
OPUNC04G20380 Oryza punctata OPUNC04G20380 I 0.708
OPUNC03G01630 Oryza punctata OPUNC03G01630 I 0.708
ONIVA04G21940 Oryza nivara ONIVA04G21940 I 0.708
ONIVA08G16700 Oryza nivara ONIVA08G16700 I 0.708
OPUNC02G25740 Oryza punctata OPUNC02G25740 I 0.708
VIT_15s0048g01270 Vitis vinifera VIT_15s0048g01270 I 0.708