CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo3g005470
(
Brassica oleracea
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Bo3g005470
T253084_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FLC
M06990_2.00
Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW
Dap-seq
OMalley et al.(2016)
AGL25_col_a
0.917
0.917
FLC
M06991_2.00
Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW
Dap-seq
OMalley et al.(2016)
AGL25_colamp_a
0.917
0.917
FLC
M08147_2.00
Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN
ChIP-seq
Mathelier et al.(2014)
MA0558.1
0.917
0.917
AGL27
M08145_2.00
Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA1012.1
0.750
0.750
AGL15
M06992_2.00
Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW
Dap-seq
OMalley et al.(2016)
AGL15_col_a
0.708
0.708
AGL15
M06993_2.00
Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH
Dap-seq
OMalley et al.(2016)
AGL15_colamp_a
0.708
0.708
AGL6
M06986_2.00
Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA
Dap-seq
OMalley et al.(2016)
AGL6_col_a
0.708
0.708
AGL3
M02693_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB
SELEX
Mathelier et al.(2014)
MA0001.2
0.708
0.708
AGL15
M10927_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_01
0.708
0.708
AGL15
M10928_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_02
0.708
0.708
AGL3
M10908_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB
Transfac
Matys et al.(2006)
P$AGL3_01
0.708
0.708
AGL3
M10909_2.00
Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN
NNWDCYAWWWWTGGNAHN
Transfac
Matys et al.(2006)
P$AGL3_02
0.708
0.708
AGL3
M10910_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL3_03
0.708
0.708
MAD17_ORYSJ
M10961_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS17_01
0.708
0.708
MADS50
M10968_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.708
0.708
MADS6
M10967_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS6_01
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo3g005470.1
MADS box
10
57
RIENKSSRQVTFSKRRSGLVEKARQLSVLCDASIALLVVSSSGKLYSF
Links
Other
MADS box
family TFs
Other
Brassica oleracea
TFs
225 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy