Bo3g024250 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo3g024250 T253091_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FLC
M06990_2.00
Arabidopsis thaliana
WWDMYNDWWWWGGAAASW

WSTTTCCWWWWHNRKHWW
Dap-seq
OMalley et al.(2016)
AGL25_col_a
0.896 0.896
FLC
M06991_2.00
Arabidopsis thaliana
WCYHAAAAWGGAAAS

STTTCCWTTTTDRGW
Dap-seq
OMalley et al.(2016)
AGL25_colamp_a
0.896 0.896
FLC
M08147_2.00
Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH

DDBTTTCYWWTTTBRGHWWNN
ChIP-seq
Mathelier et al.(2014)
MA0558.1
0.896 0.896
AGL27
M08145_2.00
Arabidopsis thaliana
MCMAAAATRGAAAB

VTTTCYATTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA1012.1
0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g024250.1 MADS box 10 57

Links

Other MADS box family TFs
Other Brassica oleracea TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MAF4 Arabidopsis lyrata Al_scaffold_0008_3055 I 0.729
AGL27 Arabidopsis thaliana AT1G77080 D 0.745
FLC Arabidopsis thaliana AT5G10140 D 0.896
AGL31 Arabidopsis thaliana AT5G65050 I 0.745
MAF4 Arabidopsis thaliana AT5G65070 I 0.729
MAF5 Arabidopsis thaliana AT5G65080 I 0.723
Bo01054s010 Brassica oleracea Bo01054s010 I 0.750
Bo13628s010 Brassica oleracea Bo13628s010 I 0.875
Bo2g166500 Brassica oleracea Bo2g166500 I 0.729
Bo3g005470 Brassica oleracea Bo3g005470 I 0.812
Bo3g100540 Brassica oleracea Bo3g100540 I 0.766
Bo3g100570 Brassica oleracea Bo3g100570 I 0.809
Bo9g173370 Brassica oleracea Bo9g173370 I 0.875
Bo9g173400 Brassica oleracea Bo9g173400 I 0.875
Bostr.0568s0285 Boechera stricta Bostr.0568s0285 I 0.729
Bostr.13175s0088 Boechera stricta Bostr.13175s0088 I 0.875
Bostr.18351s0063 Boechera stricta Bostr.18351s0063 I 0.896
Bra006051 Brassica rapa Bra006051 I 0.854
Bra009055 Brassica rapa Bra009055 I 0.896
Bra022771 Brassica rapa Bra022771 I 0.958
Bra024350 Brassica rapa Bra024350 I 0.809
Bra024351 Brassica rapa Bra024351 I 0.766
Bra028599 Brassica rapa Bra028599 I 0.875
Bra031884 Brassica rapa Bra031884 I 0.745
Bra031886 Brassica rapa Bra031886 I 0.766
Bra031888 Brassica rapa Bra031888 I 0.766
Cagra.0450s0030 Capsella grandiflora Cagra.0450s0030 I 0.750
Cagra.0917s0078 Capsella grandiflora Cagra.0917s0078 I 0.750
Cagra.0917s0080 Capsella grandiflora Cagra.0917s0080 I 0.750
Cagra.0917s0081 Capsella grandiflora Cagra.0917s0081 I 0.723
Cagra.1085s0045 Capsella grandiflora Cagra.1085s0045 I 0.896
Carubv10020979m.g Capsella rubella Carubv10020979m.g I 0.750
Carubv10028173m.g Capsella rubella Carubv10028173m.g I 0.750
MAF1 Arabidopsis lyrata fgenesh2_kg.2__2000__AT1G77080.2 I 0.729
fgenesh2_kg.8__2543__AT5G65050.2 Arabidopsis lyrata fgenesh2_kg.8__2543__AT5G65050.2 I 0.745
POPTR_0003s16840 Populus trichocarpa POPTR_0003s16840 I 0.708
POPTR_0003s16870 Populus trichocarpa POPTR_0003s16870 I 0.708
FLC Arabidopsis lyrata scaffold_601028.1 I 0.896
Thhalv10004949m.g Eutrema salsugineum Thhalv10004949m.g I 0.750
Thhalv10014726m.g Eutrema salsugineum Thhalv10014726m.g I 0.896