Bo3g100540 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo3g100540 T253095_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FLC
M06990_2.00
Arabidopsis thaliana
WWDMYNDWWWWGGAAASW

WSTTTCCWWWWHNRKHWW
Dap-seq
OMalley et al.(2016)
AGL25_col_a
0.809 0.809
FLC
M06991_2.00
Arabidopsis thaliana
WCYHAAAAWGGAAAS

STTTCCWTTTTDRGW
Dap-seq
OMalley et al.(2016)
AGL25_colamp_a
0.809 0.809
FLC
M08147_2.00
Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH

DDBTTTCYWWTTTBRGHWWNN
ChIP-seq
Mathelier et al.(2014)
MA0558.1
0.809 0.809
AGL27
M08145_2.00
Arabidopsis thaliana
MCMAAAATRGAAAB

VTTTCYATTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA1012.1
0.766 0.766
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g100540.1 MADS box 10 56

Links

Other MADS box family TFs
Other Brassica oleracea TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra024351 Brassica rapa Bra024351 I 0.957
Cagra.0917s0078 Capsella grandiflora Cagra.0917s0078 I 0.872
Bra024350 Brassica rapa Bra024350 I 0.851
Cagra.0917s0080 Capsella grandiflora Cagra.0917s0080 I 0.851
Bra031886 Brassica rapa Bra031886 I 0.851
Bo3g100570 Brassica oleracea Bo3g100570 I 0.851
Bo01054s010 Brassica oleracea Bo01054s010 I 0.851
MAF5 Arabidopsis thaliana AT5G65080 I 0.830
Bra031884 Brassica rapa Bra031884 I 0.830
Thhalv10004949m.g Eutrema salsugineum Thhalv10004949m.g I 0.830
Carubv10028173m.g Capsella rubella Carubv10028173m.g I 0.830
Bra006051 Brassica rapa Bra006051 I 0.809
Bra009055 Brassica rapa Bra009055 I 0.809
FLC Arabidopsis lyrata scaffold_601028.1 I 0.809
Bostr.18351s0063 Boechera stricta Bostr.18351s0063 I 0.809
Thhalv10014726m.g Eutrema salsugineum Thhalv10014726m.g I 0.809
FLC Arabidopsis thaliana AT5G10140 D 0.809
Cagra.1085s0045 Capsella grandiflora Cagra.1085s0045 I 0.809
Bostr.13175s0088 Boechera stricta Bostr.13175s0088 I 0.792
Bra031888 Brassica rapa Bra031888 I 0.787
fgenesh2_kg.8__2543__AT5G65050.2 Arabidopsis lyrata fgenesh2_kg.8__2543__AT5G65050.2 I 0.787
Bostr.0568s0285 Boechera stricta Bostr.0568s0285 I 0.787
Bra028599 Brassica rapa Bra028599 I 0.787
Bo9g173370 Brassica oleracea Bo9g173370 I 0.787
AGL31 Arabidopsis thaliana AT5G65050 I 0.787
Bo2g166500 Brassica oleracea Bo2g166500 I 0.766
Bo13628s010 Brassica oleracea Bo13628s010 I 0.766
Cagra.0917s0081 Capsella grandiflora Cagra.0917s0081 I 0.766
MAF4 Arabidopsis thaliana AT5G65070 I 0.766
AGL27 Arabidopsis thaliana AT1G77080 D 0.766
Carubv10020979m.g Capsella rubella Carubv10020979m.g I 0.766
Cagra.0450s0030 Capsella grandiflora Cagra.0450s0030 I 0.766
Bo3g005470 Brassica oleracea Bo3g005470 I 0.766
fgenesh2_kg.233__4__AT5G65050.3 Arabidopsis lyrata fgenesh2_kg.233__4__AT5G65050.3 I 0.766
MAF1 Arabidopsis lyrata fgenesh2_kg.2__2000__AT1G77080.2 I 0.766
MAF4 Arabidopsis lyrata Al_scaffold_0008_3055 I 0.766
Bo9g173400 Brassica oleracea Bo9g173400 I 0.766
Bo3g024250 Brassica oleracea Bo3g024250 I 0.766
Bra022771 Brassica rapa Bra022771 I 0.750
MAF3 Arabidopsis thaliana AT5G65060 I 0.745
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.724