Bo3g100570 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo3g100570 T253096_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.872 0.872
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.872 0.872
AGL27
M08145_2.00 		Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA1012.1 		0.872 0.872
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.872 0.872
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g100570.1 MADS box 10 56

Links

Other MADS box family TFs
Other Brassica oleracea TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra024350 Brassica rapa Bra024350 I 1.000
Bra031888 Brassica rapa Bra031888 I 0.915
Bo2g166500 Brassica oleracea Bo2g166500 I 0.894
Bra031886 Brassica rapa Bra031886 I 0.894
Bra028599 Brassica rapa Bra028599 I 0.894
Bra024351 Brassica rapa Bra024351 I 0.894
fgenesh2_kg.8__2543__AT5G65050.2 Arabidopsis lyrata fgenesh2_kg.8__2543__AT5G65050.2 I 0.894
FLC Arabidopsis lyrata scaffold_601028.1 I 0.872
Carubv10020979m.g Capsella rubella Carubv10020979m.g I 0.872
Thhalv10014726m.g Eutrema salsugineum Thhalv10014726m.g I 0.872
Cagra.1085s0045 Capsella grandiflora Cagra.1085s0045 I 0.872
Cagra.0450s0030 Capsella grandiflora Cagra.0450s0030 I 0.872
Bostr.0568s0285 Boechera stricta Bostr.0568s0285 I 0.872
Bostr.18351s0063 Boechera stricta Bostr.18351s0063 I 0.872
Bra009055 Brassica rapa Bra009055 I 0.872
MAF1 Arabidopsis lyrata fgenesh2_kg.2__2000__AT1G77080.2 I 0.872
FLC Arabidopsis thaliana AT5G10140 D 0.872
AGL31 Arabidopsis thaliana AT5G65050 I 0.872
AGL27 Arabidopsis thaliana AT1G77080 D 0.872
Bo01054s010 Brassica oleracea Bo01054s010 I 0.872
Bostr.13175s0088 Boechera stricta Bostr.13175s0088 I 0.854
Cagra.0917s0081 Capsella grandiflora Cagra.0917s0081 I 0.851
Bo9g173370 Brassica oleracea Bo9g173370 I 0.851
Bo3g100540 Brassica oleracea Bo3g100540 I 0.851
fgenesh2_kg.233__4__AT5G65050.3 Arabidopsis lyrata fgenesh2_kg.233__4__AT5G65050.3 I 0.851
MAF5 Arabidopsis thaliana AT5G65080 I 0.851
Bra031884 Brassica rapa Bra031884 I 0.851
Cagra.0917s0080 Capsella grandiflora Cagra.0917s0080 I 0.830
Bo9g173400 Brassica oleracea Bo9g173400 I 0.830
Bra006051 Brassica rapa Bra006051 I 0.830
Thhalv10004949m.g Eutrema salsugineum Thhalv10004949m.g I 0.830
Bo13628s010 Brassica oleracea Bo13628s010 I 0.830
MAF4 Arabidopsis thaliana AT5G65070 I 0.812
Bra022771 Brassica rapa Bra022771 I 0.812
MAF4 Arabidopsis lyrata Al_scaffold_0008_3055 I 0.812
Cagra.0917s0078 Capsella grandiflora Cagra.0917s0078 I 0.809
MAF3 Arabidopsis thaliana AT5G65060 I 0.809
Bo3g024250 Brassica oleracea Bo3g024250 I 0.809
Carubv10028173m.g Capsella rubella Carubv10028173m.g I 0.809
Bo3g005470 Brassica oleracea Bo3g005470 I 0.787
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.759
Thhalv10005413m.g Eutrema salsugineum Thhalv10005413m.g I 0.745
POPTR_0003s16840 Populus trichocarpa POPTR_0003s16840 I 0.723
POPTR_0003s16870 Populus trichocarpa POPTR_0003s16870 I 0.723
POPTR_0001s13660 Populus trichocarpa POPTR_0001s13660 I 0.708
POPTR_0006s04730 Populus trichocarpa POPTR_0006s04730 I 0.708
SapurV1A.0228s0130 Salix purpurea SapurV1A.0228s0130 I 0.702
MDP0000144516 Malus domestica MDP0000144516 I 0.702
MDP0000135652 Malus domestica MDP0000135652 I 0.702
SapurV1A.0068s0650 Salix purpurea SapurV1A.0068s0650 I 0.702
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.702
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.700