Bo4g111230 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo4g111230 T253108_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL16
M06987_2.00
Arabidopsis thaliana
TWCCHAAWDDGGWAA

TTWCCHHWTTDGGWA
Dap-seq
OMalley et al.(2016)
AGL16_col_a
0.750 0.750
AGL16
M06988_2.00
Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS

STTTCCHWWTWDGGWAANWHW
Dap-seq
OMalley et al.(2016)
AGL16_colamp_a
0.750 0.750
MADS50
M10968_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.750 0.750
Solyc05g012020.2
M10986_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_01
0.750 0.750
Solyc05g012020.2
M10987_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2_01
0.750 0.750
Solyc05g012020.2
M10988_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2
0.750 0.750
AGL15
M06992_2.00
Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN

NTTTCYWHWTTDGGWAANW
Dap-seq
OMalley et al.(2016)
AGL15_col_a
0.729 0.729
AGL15
M06993_2.00
Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH

DDNTTTCYHHWTTDGGWAANH
Dap-seq
OMalley et al.(2016)
AGL15_colamp_a
0.729 0.729
AGL6
M06986_2.00
Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW

WWNTTWCYWTTTTDGGWAA
Dap-seq
OMalley et al.(2016)
AGL6_col_a
0.729 0.729
AGL15
M10927_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_01
0.729 0.729
AGL15
M10928_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_02
0.729 0.729
Q9ATE7_PETHY
M11010_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP22_01
0.729 0.729
MAD17_ORYSJ
M10961_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS17_01
0.729 0.729
MADS6
M10967_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS6_01
0.729 0.729
SOC1
M08425_2.00
Arabidopsis thaliana
CCAAAAAWRGAAAND

HNTTTCYWTTTTTGG
ChIP-chip
Mathelier et al.(2014)
MA0554.1
0.708 0.708
SOC1
M10915_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL20_01
0.708 0.708
MLOC_61901
M10964_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM8_01
0.708 0.708
Q9LEH9_HORVU
M10983_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM9_01
0.708 0.708
Q40882_PETHY
M11003_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP11_01
0.708 0.708
Q9ATE3_PETHY
M11008_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP28_01
0.708 0.708
Q9ATF1_PETHY
M11013_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP9_01
0.708 0.708
O82699_MALDO
M11022_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_01
0.708 0.708
Q9FR84_MAIZE
M10981_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_03
0.708 0.708
Q9ST54_MALDO
M11029_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_04
0.708 0.708
O82697_MALDO
M11020_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS7_01
0.708 0.708
Q41829_MAIZE
M10977_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ZAP1_02
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g111230.1 MADS box 10 57

Links

Other MADS box family TFs
Other Brassica oleracea TFs

Invalid Input OrderBy

735 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action