Bo4g165540 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo4g165540 T253119_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g165540.1 MADS box 15 62

Links

Other MADS box family TFs
Other Brassica oleracea TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MDP0000434703 Malus domestica MDP0000434703 I 0.812
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.708
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.711
AGL62 Arabidopsis thaliana AT5G60440 I 0.792
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.792
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.771
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.771
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.812
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.708
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.708
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.750
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.771
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.792
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.729
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.729
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.750
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.771
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.750
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.771
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.750
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.729
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.729
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.771
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.771
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.708
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.750
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.750
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.708
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.708
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.812
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.708
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.708
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.750
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.729
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.771
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.812
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.771
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.750
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.729
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.771
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.750
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.750
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.729
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.750
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.750
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.771
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.708
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.750
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.729
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.729
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.729
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.708
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.750
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.792
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.771
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.771
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.729
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.729
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.854
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.708
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.708
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.833
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.750
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.771
Thhalv10028255m.g Eutrema salsugineum Thhalv10028255m.g N 0.750
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.750
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.771
MDP0000278770 Malus domestica MDP0000278770 N 0.792
MDP0000233925 Malus domestica MDP0000233925 N 0.792
MDP0000221590 Malus domestica MDP0000221590 N 0.729
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.771
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.750
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.729
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.750
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.771
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.771
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.792
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.771
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.750
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.750
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.833
MDP0000168914 Malus domestica MDP0000168914 N 0.750
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.729
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.708
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.812
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.792
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.750
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.833
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.792
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.708
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.812
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.792
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.708
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.729
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.729
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.729
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.729
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.708
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.771
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.729
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.729
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.708
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.708
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.750
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.812
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.729
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.708
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.708
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.771
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.708
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.729
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.708
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.729
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.729
Bo9g142570 Brassica oleracea Bo9g142570 N 0.729
Bo8g099550 Brassica oleracea Bo8g099550 N 0.708
Bo5g113750 Brassica oleracea Bo5g113750 N 0.750
Bo4g070340 Brassica oleracea Bo4g070340 N 0.809
Bo1g112460 Brassica oleracea Bo1g112460 N 0.771
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.771
AGL61 Arabidopsis thaliana AT2G24840 N 0.750
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.750
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.708
Bra002480 Brassica rapa Bra002480 N 0.750
Bra007829 Brassica rapa Bra007829 N 0.708
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.729
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.729
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.750
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.812
Bra038225 Brassica rapa Bra038225 N 0.750
Bra035685 Brassica rapa Bra035685 N 0.958
Bra026764 Brassica rapa Bra026764 N 0.729
Bra022434 Brassica rapa Bra022434 N 0.771
Bra011938 Brassica rapa Bra011938 N 0.812
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.729
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.708
mgf024307m Mimulus guttatus mgf024307m N 0.771
Pm021070 Prunus mume Pm021070 N 0.792
Pm021018 Prunus mume Pm021018 N 0.812
Pm021017 Prunus mume Pm021017 N 0.708
Pm016629 Prunus mume Pm016629 N 0.729
Cla006571 Citrullus lanatus Cla006571 N 0.792
Ca_26354 Cicer arietinum Ca_26354 N 0.771
Ca_07607 Cicer arietinum Ca_07607 N 0.771
Ca_04665 Cicer arietinum Ca_04665 N 0.750
Ca_04661 Cicer arietinum Ca_04661 N 0.708
Pm021071 Prunus mume Pm021071 N 0.792
29613.m000367 Ricinus communis 29613.m000367 N 0.771
mgf022147m Mimulus guttatus mgf022147m N 0.750
mgf018529m Mimulus guttatus mgf018529m N 0.771
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.792
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.708
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.729
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.792
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.708
30099.m001672 Ricinus communis 30099.m001672 N 0.771
30099.m001671 Ricinus communis 30099.m001671 N 0.771
Ca_04660 Cicer arietinum Ca_04660 N 0.750
Ca_04659 Cicer arietinum Ca_04659 N 0.750
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.792
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.708
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.792
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.812
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.729
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.708
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.792
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.729
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.771
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.812
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.792
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.750
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.750
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.708
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.812
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.771
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.750
TCM_040735 Theobroma cacao TCM_040735 N 0.729
TCM_006324 Theobroma cacao TCM_006324 N 0.708
TCM_006323 Theobroma cacao TCM_006323 N 0.833
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.729