Bo5g145000 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo5g145000 T253129_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA

TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.778 0.778
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g145000.1 MADS box 10 55

Links

Other MADS box family TFs
Other Brassica oleracea TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGL80 Arabidopsis thaliana AT5G48670 D 0.729
Bo2g104810 Brassica oleracea Bo2g104810 I 0.729
Bo9g078450 Brassica oleracea Bo9g078450 I 0.729
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.711
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.708
Bra018490 Brassica rapa Bra018490 I 0.750
Bra029469 Brassica rapa Bra029469 I 0.729
Bra041022 Brassica rapa Bra041022 I 0.978
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.729
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.729
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.708
Ca_06495 Cicer arietinum Ca_06495 I 0.727
Ca_08934 Cicer arietinum Ca_08934 I 0.750
Ca_13275 Cicer arietinum Ca_13275 I 0.778
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.778
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.711
GLYMA11G30640 Glycine max GLYMA11G30640 N 0.705
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.733
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.756
GLYMA18G05916 Glycine max GLYMA18G05916 N 0.733
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.704
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.793
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.711
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.711
mgf026186m Mimulus guttatus mgf026186m I 0.705
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.778
MTR_4g031910 Medicago truncatula MTR_4g031910 N 0.711
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.733
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.733
TCM_026842 Theobroma cacao TCM_026842 I 0.756
Thhalv10002350m.g Eutrema salsugineum Thhalv10002350m.g I 0.711
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.705
Thhalv10019731m.g Eutrema salsugineum Thhalv10019731m.g I 0.714
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.778
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.729
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.729