CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo6g121610
(
Brassica oleracea
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Bo6g121610
T253153_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL67
M10907_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT1G77950_01
0.917
0.917
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo6g121610.1
MADS box
10
57
PIQKSTNRQITYSKRKKGLIKKAYELSTLCDIDLALLMFSPSDRLCIF
Links
Other
MADS box
family TFs
Other
Brassica oleracea
TFs
81 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra015645
Brassica rapa
Bra015645
I
0.958
AGL67
Arabidopsis thaliana
AT1G77950
D
0.917
Carubv10021761m.g
Capsella rubella
Carubv10021761m.g
I
0.917
Cagra.0096s0039
Capsella grandiflora
Cagra.0096s0039
I
0.917
fgenesh2_kg.2__2089__AT1G77950.1
Arabidopsis lyrata
fgenesh2_kg.2__2089__AT1G77950.1
I
0.896
Thhalv10019795m.g
Eutrema salsugineum
Thhalv10019795m.g
I
0.896
fgenesh2_kg.2__2429__AT1G77950.2
Arabidopsis lyrata
fgenesh2_kg.2__2429__AT1G77950.2
I
0.896
Thhalv10019686m.g
Eutrema salsugineum
Thhalv10019686m.g
I
0.750
Carubv10021590m.g
Capsella rubella
Carubv10021590m.g
I
0.750
LPERR06G07270
Leersia perrieri
LPERR06G07270
I
0.750
AGL66
Arabidopsis lyrata
fgenesh2_kg.2__2091__AT1G77980.1
I
0.750
Cagra.0096s0037
Capsella grandiflora
Cagra.0096s0037
I
0.750
Bo6g121640
Brassica oleracea
Bo6g121640
I
0.750
Bra015643
Brassica rapa
Bra015643
I
0.750
AGL66
Arabidopsis thaliana
AT1G77980
I
0.750
OLONG_004474
Oryza longistaminata
OLONG_004474
I
0.750
OB06G17440
Oryza brachyantha
OB06G17440
I
0.750
Carubv10010907m.g
Capsella rubella
Carubv10010907m.g
I
0.729
ORGLA08G0167200
Oryza glaberrima
ORGLA08G0167200
I
0.729
OPUNC06G07570
Oryza punctata
OPUNC06G07570
I
0.729
Cagra.1707s0007
Capsella grandiflora
Cagra.1707s0007
I
0.729
Si008439m.g
Setaria italica
Si008439m.g
I
0.729
Traes_4DS_A28BC582A
Triticum aestivum
Traes_4DS_A28BC582A
I
0.729
TRIUR3_20588
Triticum urartu
TRIUR3_20588
I
0.729
Bostr.20129s0232
Boechera stricta
Bostr.20129s0232
I
0.729
OS08G0494100
Oryza sativa
OS08G0494100
I
0.729
ORUFI08G21330
Oryza rufipogon
ORUFI08G21330
I
0.729
OGLUM08G20110
Oryza glumaepatula
OGLUM08G20110
I
0.729
AGL104
Arabidopsis lyrata
Al_scaffold_0001_2320
I
0.729
OB08G26170
Oryza brachyantha
OB08G26170
I
0.729
Bo8g071330
Brassica oleracea
Bo8g071330
I
0.729
Bra012308
Brassica rapa
Bra012308
I
0.729
Bra016386
Brassica rapa
Bra016386
I
0.729
Bo7g060150
Brassica oleracea
Bo7g060150
I
0.729
BGIOSGA026745
Oryza indica
BGIOSGA026745
I
0.729
AMTR_s00010p00214260
Amborella trichopoda
AMTR_s00010p00214260
I
0.729
AGL104
Arabidopsis thaliana
AT1G22130
I
0.729
F775_03584
Aegilops tauschii
F775_03584
I
0.729
BRADI3G39177
Brachypodium distachyon
BRADI3G39177
I
0.729
OBART08G19110
Oryza barthii
OBART08G19110
I
0.729
LPERR08G16000
Leersia perrieri
LPERR08G16000
I
0.729
estExt_fgenesh1_pg.C_1180093
Physcomitrella patens
estExt_fgenesh1_pg.C_1180093
I
0.708
mgf017317m
Mimulus guttatus
mgf017317m
I
0.708
orange1.1g039560m.g
Citrus sinensis
orange1.1g039560m.g
I
0.708
cassava32041.m1
Manihot esculenta
cassava32041.m1
I
0.708
e_gw1.55.5.1
Physcomitrella patens
e_gw1.55.5.1
I
0.708
Aquca_014_00554
Aquilegia coerulea
Aquca_014_00554
I
0.708
e_gw1.273.6.1
Physcomitrella patens
e_gw1.273.6.1
I
0.708
gene31290-v1.0-hybrid
Fragaria vesca
gene31290-v1.0-hybrid
I
0.708
Pavir.Fb01739
Panicum virgatum
Pavir.Fb01739
I
0.708
SapurV1A.0010s0340
Salix purpurea
SapurV1A.0010s0340
I
0.708
MDP0000243965
Malus domestica
MDP0000243965
I
0.708
Pavir.Db01574
Panicum virgatum
Pavir.Db01574
I
0.708
Ciclev10003964m.g
Citrus clementina
Ciclev10003964m.g
I
0.708
29908.m005982
Ricinus communis
29908.m005982
I
0.708
Pavir.J32837
Panicum virgatum
Pavir.J32837
I
0.708
ORUFI06G08110
Oryza rufipogon
ORUFI06G08110
I
0.708
OGLUM06G08350
Oryza glumaepatula
OGLUM06G08350
I
0.708
OBART06G07860
Oryza barthii
OBART06G07860
I
0.708
OMERI06G09450
Oryza meridionalis
OMERI06G09450
I
0.708
ONIVA06G09080
Oryza nivara
ONIVA06G09080
I
0.708
ONIVA08G21050
Oryza nivara
ONIVA08G21050
I
0.708
MTR_4g084740
Medicago truncatula
MTR_4g084740
I
0.708
GSMUA_Achr9G13010_001
Musa acuminata
GSMUA_Achr9G13010_001
I
0.708
BGIOSGA003731
Oryza indica
BGIOSGA003731
I
0.708
GRMZM2G152415
Zea mays
GRMZM2G152415
I
0.708
GRMZM2G334225
Zea mays
GRMZM2G334225
I
0.708
GSMUA_Achr3G04450_001
Musa acuminata
GSMUA_Achr3G04450_001
I
0.708
OPUNC08G17110
Oryza punctata
OPUNC08G17110
I
0.708
ORGLA06G0074200
Oryza glaberrima
ORGLA06G0074200
I
0.708
TCM_034970
Theobroma cacao
TCM_034970
I
0.708
Ca_24539
Cicer arietinum
Ca_24539
I
0.708
Cla014721
Citrullus lanatus
Cla014721
I
0.708
Pm005355
Prunus mume
Pm005355
I
0.708
TCM_001182
Theobroma cacao
TCM_001182
I
0.708
Si013985m.g
Setaria italica
Si013985m.g
I
0.708
OS06G0223300
Oryza sativa
OS06G0223300
I
0.708
POPTR_0002s09290
Populus trichocarpa
POPTR_0002s09290
I
0.708
PRUPE_ppa007816mg
Prunus persica
PRUPE_ppa007816mg
I
0.708
Sb10g007810
Sorghum bicolor
Sb10g007810
I
0.708
Pm019181
Prunus mume
Pm019181
I
0.708