Bo9g078450 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo9g078450 T253201_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA

TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.896 0.896
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g078450.1 MADS box 10 58

Links

Other MADS box family TFs
Other Brassica oleracea TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGL80 Arabidopsis thaliana AT5G48670 D 0.896
evm.TU.contig_35265 Carica papaya evm.TU.contig_35265 I 0.727
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.708
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.771
MDP0000123878 Malus domestica MDP0000123878 I 0.704
MDP0000726295 Malus domestica MDP0000726295 I 0.704
MDP0000846004 Malus domestica MDP0000846004 I 0.771
MDP0000925348 Malus domestica MDP0000925348 I 0.729
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.761
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.809
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.729
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.729
Thhalv10002346m.g Eutrema salsugineum Thhalv10002346m.g I 0.745
Thhalv10002349m.g Eutrema salsugineum Thhalv10002349m.g I 0.702
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.792
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.723
evm.TU.contig_36543 Carica papaya evm.TU.contig_36543 I 0.708
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.727
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.711
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.727
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.787
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.729
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.717
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.717
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.792
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.792
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.792
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.750
Thhalv10002350m.g Eutrema salsugineum Thhalv10002350m.g I 0.756
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.727
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.938
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.917
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.917
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.875
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.771
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.767
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.717
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.741
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.862
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.733
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.733
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.741
Thhalv10019833m.g Eutrema salsugineum Thhalv10019833m.g I 0.702
Thhalv10019810m.g Eutrema salsugineum Thhalv10019810m.g I 0.702
Thhalv10002353m.g Eutrema salsugineum Thhalv10002353m.g I 0.705
Thhalv10002789m.g Eutrema salsugineum Thhalv10002789m.g I 0.717
Thhalv10002956m.g Eutrema salsugineum Thhalv10002956m.g I 0.711
Thhalv10002996m.g Eutrema salsugineum Thhalv10002996m.g I 0.711
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.792
Thhalv10019449m.g Eutrema salsugineum Thhalv10019449m.g I 0.723
Thhalv10019451m.g Eutrema salsugineum Thhalv10019451m.g I 0.745
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.833
Thhalv10019516m.g Eutrema salsugineum Thhalv10019516m.g I 0.723
Thhalv10019579m.g Eutrema salsugineum Thhalv10019579m.g I 0.745
Thhalv10019731m.g Eutrema salsugineum Thhalv10019731m.g I 0.738
Thhalv10019751m.g Eutrema salsugineum Thhalv10019751m.g I 0.745
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.729
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.708
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.750
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.745
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.750
TCM_025670 Theobroma cacao TCM_025670 I 0.750
TCM_025671 Theobroma cacao TCM_025671 I 0.723
TCM_026842 Theobroma cacao TCM_026842 I 0.833
TCM_026845 Theobroma cacao TCM_026845 I 0.708
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.812
Ca_06495 Cicer arietinum Ca_06495 I 0.841
Ca_08934 Cicer arietinum Ca_08934 I 0.727
Ca_13275 Cicer arietinum Ca_13275 I 0.844
Cla005226 Citrullus lanatus Cla005226 I 0.778
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.800
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.833
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.729
Bo2g104810 Brassica oleracea Bo2g104810 I 0.917
Bo5g145000 Brassica oleracea Bo5g145000 I 0.729
Bra018490 Brassica rapa Bra018490 I 0.938
Bra029469 Brassica rapa Bra029469 I 1.000
Bra041022 Brassica rapa Bra041022 I 0.778
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.822
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.844
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.844
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.833
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.812
Pm003257 Prunus mume Pm003257 I 0.745
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.727
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.812
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.812
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.761
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.756
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.739
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.739
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.708
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.783
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.723
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.711
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.711
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.917
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.917
Bostr.2570s0083 Boechera stricta Bostr.2570s0083 I 0.729
Pm004396 Prunus mume Pm004396 I 0.800
30128.m008984 Ricinus communis 30128.m008984 I 0.854
30199.m000879 Ricinus communis 30199.m000879 I 0.787
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.711
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.812
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.778
mgf026186m Mimulus guttatus mgf026186m I 0.795
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.733
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.750
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.917
GSMUA_Achr2G18410_001 Musa acuminata GSMUA_Achr2G18410_001 N 0.710
MTR_1g084950 Medicago truncatula MTR_1g084950 N 0.708
Ca_08369 Cicer arietinum Ca_08369 N 0.750
MTR_4g028720 Medicago truncatula MTR_4g028720 N 0.708
Pm003258 Prunus mume Pm003258 N 0.711