Bo9g078450 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo9g078450 T253201_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA

TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.896 0.896
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g078450.1 MADS box 10 58

Links

Other MADS box family TFs
Other Brassica oleracea TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00007p00041830 Amborella trichopoda AMTR_s00007p00041830 I 0.000
AMTR_s00021p00158020 Amborella trichopoda AMTR_s00021p00158020 I 0.000
AMTR_s00029p00245970 Amborella trichopoda AMTR_s00029p00245970 I 0.000
AMTR_s00119p00135380 Amborella trichopoda AMTR_s00119p00135380 I 0.000
Aquca_057_00119 Aquilegia coerulea Aquca_057_00119 I 0.000
Aquca_005_00099 Aquilegia coerulea Aquca_005_00099 I 0.000
TCP4 Arabidopsis lyrata scaffold_301743.1 D 0.000
TCP3 Arabidopsis lyrata fgenesh2_kg.1__4401__AT1G53230.1 I 0.000
TCP10 Arabidopsis lyrata scaffold_401627.1 I 0.000
TCP4 Arabidopsis thaliana AT3G15030 D 0.000
TCP10 Arabidopsis thaliana AT2G31070 I 0.000
TCP3 Arabidopsis thaliana AT1G53230 D 0.000
Bostr.0124s0115 Boechera stricta Bostr.0124s0115 I 0.000
Bostr.24513s0122 Boechera stricta Bostr.24513s0122 I 0.000
Bostr.28625s0206 Boechera stricta Bostr.28625s0206 I 0.000
BRADI1G58450 Brachypodium distachyon BRADI1G58450 I 0.000
BRADI2G50687 Brachypodium distachyon BRADI2G50687 I 0.000
BRADI2G06890 Brachypodium distachyon BRADI2G06890 I 0.000
Bo5g127500 Brassica oleracea Bo5g127500 I 0.000
Bo3g066540 Brassica oleracea Bo3g066540 I 0.000
Bo1g129830 Brassica oleracea Bo1g129830 I 0.000
Bo4g053680 Brassica oleracea Bo4g053680 I 0.000
Bra030952 Brassica rapa Bra030952 I 0.000
Bra027284 Brassica rapa Bra027284 I 0.000
Bra021586 Brassica rapa Bra021586 I 0.000
Bra018280 Brassica rapa Bra018280 I 0.000
Bra001579 Brassica rapa Bra001579 I 0.000
Bra010789 Brassica rapa Bra010789 I 0.000
PK12847.1 Cannabis sativa PK12847.1 I 0.000
PK29658.1 Cannabis sativa PK29658.1 I 0.000
PK04257.1 Cannabis sativa PK04257.1 I 0.000
Cagra.1472s0007 Capsella grandiflora Cagra.1472s0007 I 0.000
Cagra.3678s0010 Capsella grandiflora Cagra.3678s0010 I 0.000
Cagra.2527s0006 Capsella grandiflora Cagra.2527s0006 I 0.000
Cagra.0007s0045 Capsella grandiflora Cagra.0007s0045 I 0.000
Carubv10013851m.g Capsella rubella Carubv10013851m.g I 0.000
Carubv10009348m.g Capsella rubella Carubv10009348m.g I 0.000
Carubv10023502m.g Capsella rubella Carubv10023502m.g I 0.000
evm.TU.supercontig_131.71 Carica papaya evm.TU.supercontig_131.71 I 0.000
evm.TU.supercontig_17.1 Carica papaya evm.TU.supercontig_17.1 I 0.000
evm.TU.supercontig_209.13 Carica papaya evm.TU.supercontig_209.13 I 0.000
Ca_12866 Cicer arietinum Ca_12866 I 0.000
Ca_11295 Cicer arietinum Ca_11295 I 0.000
Ca_05033 Cicer arietinum Ca_05033 I 0.000
Ca_02473 Cicer arietinum Ca_02473 I 0.000
Ca_00482 Cicer arietinum Ca_00482 I 0.000
Ca_16227 Cicer arietinum Ca_16227 I 0.000
Cla023702 Citrullus lanatus Cla023702 I 0.000
Cla016530 Citrullus lanatus Cla016530 I 0.000
Cla002460 Citrullus lanatus Cla002460 I 0.000
Cla013734 Citrullus lanatus Cla013734 I 0.000
Ciclev10014986m.g Citrus clementina Ciclev10014986m.g I 0.000
Ciclev10008390m.g Citrus clementina Ciclev10008390m.g I 0.000
Ciclev10015871m.g Citrus clementina Ciclev10015871m.g I 0.000
orange1.1g009938m.g Citrus sinensis orange1.1g009938m.g I 0.000
orange1.1g019898m.g Citrus sinensis orange1.1g019898m.g I 0.000
orange1.1g014360m.g Citrus sinensis orange1.1g014360m.g I 0.000
Cucsa.273460 Cucumis sativus Cucsa.273460 I 0.000
Cucsa.384890 Cucumis sativus Cucsa.384890 I 0.000
Cucsa.122730 Cucumis sativus Cucsa.122730 I 0.000
Eucgr.K01089 Eucalyptus grandis Eucgr.K01089 I 0.000
Eucgr.F01204 Eucalyptus grandis Eucgr.F01204 I 0.000
Thhalv10011534m.g Eutrema salsugineum Thhalv10011534m.g I 0.000
Thhalv10016870m.g Eutrema salsugineum Thhalv10016870m.g I 0.000
Thhalv10020786m.g Eutrema salsugineum Thhalv10020786m.g I 0.000
Thhalv10021021m.g Eutrema salsugineum Thhalv10021021m.g I 0.000
gene27171-v1.0-hybrid Fragaria vesca gene27171-v1.0-hybrid I 0.000
gene17805-v1.0-hybrid Fragaria vesca gene17805-v1.0-hybrid I 0.000
gene29800-v1.0-hybrid Fragaria vesca gene29800-v1.0-hybrid N 0.000
gene30370-v1.0-hybrid Fragaria vesca gene30370-v1.0-hybrid I 0.000
GLYMA06G43721 Glycine max GLYMA06G43721 I 0.000
GLYMA06G34330 Glycine max GLYMA06G34330 I 0.000
GLYMA15G09910 Glycine max GLYMA15G09910 I 0.000
GLYMA12G14200 Glycine max GLYMA12G14200 I 0.000
GLYMA13G36840 Glycine max GLYMA13G36840 I 0.000
GLYMA13G34690 Glycine max GLYMA13G34690 I 0.000
GLYMA13G29160 Glycine max GLYMA13G29160 I 0.000
GLYMA12G35720 Glycine max GLYMA12G35720 I 0.000
GLYMA12G33640 Glycine max GLYMA12G33640 I 0.000
GLYMA12G20160 Glycine max GLYMA12G20160 I 0.000
GLYMA05G27367 Glycine max GLYMA05G27367 I 0.000
Gorai.013G172800 Gossypium raimondii Gorai.013G172800 I 0.000
Gorai.009G373000 Gossypium raimondii Gorai.009G373000 I 0.000
Gorai.002G064500 Gossypium raimondii Gorai.002G064500 I 0.000
Gorai.009G153900 Gossypium raimondii Gorai.009G153900 I 0.000
Gorai.011G046000 Gossypium raimondii Gorai.011G046000 I 0.000
MLOC_10214 Hordeum vulgare MLOC_10214 I 0.000
MLOC_63989 Hordeum vulgare MLOC_63989 I 0.000
MLOC_68285 Hordeum vulgare MLOC_68285 I 0.000
LPERR01G06830 Leersia perrieri LPERR01G06830 I 0.000
LPERR03G30870 Leersia perrieri LPERR03G30870 I 0.000
LPERR05G18480 Leersia perrieri LPERR05G18480 I 0.000
LPERR07G02820 Leersia perrieri LPERR07G02820 I 0.000
Lus10023297.g Linum usitatissimum Lus10023297.g I 0.000
Lus10000463.g Linum usitatissimum Lus10000463.g I 0.000
LjT20A21.20.nc Lotus japonicus LjT20A21.20.nc D 0.000
chr3.CM0160.1110.nc Lotus japonicus chr3.CM0160.1110.nc I 0.000
MDP0000243495 Malus domestica MDP0000243495 I 0.000
MDP0000287069 Malus domestica MDP0000287069 I 0.000
MDP0000182310 Malus domestica MDP0000182310 I 0.000
MDP0000184743 Malus domestica MDP0000184743 I 0.000
MDP0000259723 Malus domestica MDP0000259723 I 0.000
MDP0000927314 Malus domestica MDP0000927314 I 0.000
MDP0000916623 Malus domestica MDP0000916623 I 0.000
MDP0000442611 Malus domestica MDP0000442611 I 0.000
cassava19177.valid.m1 Manihot esculenta cassava19177.valid.m1 I 0.000
cassava2420.valid.m1 Manihot esculenta cassava2420.valid.m1 I 0.000
cassava7638.valid.m1 Manihot esculenta cassava7638.valid.m1 I 0.000
cassava35945.valid.m1 Manihot esculenta cassava35945.valid.m1 I 0.000
cassava35669.valid.m1 Manihot esculenta cassava35669.valid.m1 I 0.000
MTR_2g090960 Medicago truncatula MTR_2g090960 I 0.000
MTR_4g079580 Medicago truncatula MTR_4g079580 I 0.000
MTR_8g463380 Medicago truncatula MTR_8g463380 I 0.000
MTR_2g078200 Medicago truncatula MTR_2g078200 I 0.000
mgf024988m Mimulus guttatus mgf024988m I 0.000
mgf021685m Mimulus guttatus mgf021685m I 0.000
mgf017929m Mimulus guttatus mgf017929m I 0.000
mgf002386m Mimulus guttatus mgf002386m I 0.000
GSMUA_Achr8G19990_001 Musa acuminata GSMUA_Achr8G19990_001 I 0.000
GSMUA_Achr7G25320_001 Musa acuminata GSMUA_Achr7G25320_001 I 0.000
GSMUA_Achr10G14340_001 Musa acuminata GSMUA_Achr10G14340_001 I 0.000
GSMUA_Achr2G12990_001 Musa acuminata GSMUA_Achr2G12990_001 I 0.000
GSMUA_Achr3G03540_001 Musa acuminata GSMUA_Achr3G03540_001 I 0.000
GSMUA_Achr3G31370_001 Musa acuminata GSMUA_Achr3G31370_001 I 0.000
GSMUA_Achr4G22960_001 Musa acuminata GSMUA_Achr4G22960_001 I 0.000
GSMUA_Achr4G31520_001 Musa acuminata GSMUA_Achr4G31520_001 I 0.000
GSMUA_Achr5G02530_001 Musa acuminata GSMUA_Achr5G02530_001 I 0.000
GSMUA_Achr5G06660_001 Musa acuminata GSMUA_Achr5G06660_001 I 0.000
GSMUA_Achr6G14430_001 Musa acuminata GSMUA_Achr6G14430_001 I 0.000
GSMUA_Achr7G01160_001 Musa acuminata GSMUA_Achr7G01160_001 I 0.000
GSMUA_Achr7G13980_001 Musa acuminata GSMUA_Achr7G13980_001 I 0.000
GSMUA_Achr10G01020_001 Musa acuminata GSMUA_Achr10G01020_001 I 0.000
OBART01G07230 Oryza barthii OBART01G07230 I 0.000
ORGLA03G0335700 Oryza glaberrima ORGLA03G0335700 I 0.000
ORGLA01G0062300 Oryza glaberrima ORGLA01G0062300 I 0.000
OGLUM01G08160 Oryza glumaepatula OGLUM01G08160 I 0.000
OGLUM03G36280 Oryza glumaepatula OGLUM03G36280 I 0.000
PCF6 Oryza indica BGIOSGA013684 I 0.000
PCF5 Oryza indica BGIOSGA002128 I 0.000
OLONG_003082 Oryza longistaminata OLONG_003082 I 0.000
OMERI03G33790 Oryza meridionalis OMERI03G33790 I 0.000
OMERI01G07200 Oryza meridionalis OMERI01G07200 I 0.000
OMERI07G02020 Oryza meridionalis OMERI07G02020 I 0.000
ONIVA01G09270 Oryza nivara ONIVA01G09270 I 0.000
ONIVA03G37780 Oryza nivara ONIVA03G37780 I 0.000
OPUNC01G06940 Oryza punctata OPUNC01G06940 I 0.000
OPUNC07G03260 Oryza punctata OPUNC07G03260 I 0.000
ORUFI01G07780 Oryza rufipogon ORUFI01G07780 I 0.000
ORUFI03G38070 Oryza rufipogon ORUFI03G38070 I 0.000
PCF6 Oryza sativa OS03G0785800 I 0.000
OS01G0213800 Oryza sativa OS01G0213800 D 0.000
Pavir.Ba03864 Panicum virgatum Pavir.Ba03864 I 0.000
Pavir.J36433 Panicum virgatum Pavir.J36433 I 0.000
Pavir.J24681 Panicum virgatum Pavir.J24681 I 0.000
Pavir.J03475 Panicum virgatum Pavir.J03475 I 0.000
Pavir.Ia00505 Panicum virgatum Pavir.Ia00505 I 0.000
fgenesh1_pg.scaffold_332000019 Physcomitrella patens fgenesh1_pg.scaffold_332000019 I 0.000
POPTR_0011s09890 Populus trichocarpa POPTR_0011s09890 I 0.000
POPTR_0011s02350 Populus trichocarpa POPTR_0011s02350 I 0.000
POPTR_0019s12110 Populus trichocarpa POPTR_0019s12110 I 0.000
XM_002300382.1 Populus trichocarpa POPTR_0001s38480 I 0.000
POPTR_0013s12370 Populus trichocarpa POPTR_0013s12370 I 0.000
Pm010440 Prunus mume Pm010440 I 0.000
Pm010118 Prunus mume Pm010118 I 0.000
Pm011369 Prunus mume Pm011369 I 0.000
Pm024946 Prunus mume Pm024946 I 0.000
Pm029788 Prunus mume Pm029788 I 0.000
PRUPE_ppb024383mg Prunus persica PRUPE_ppb024383mg I 0.000
PRUPE_ppa004612mg Prunus persica PRUPE_ppa004612mg I 0.000
PRUPE_ppa004661mg Prunus persica PRUPE_ppa004661mg I 0.000
PRUPE_ppa007094mg Prunus persica PRUPE_ppa007094mg I 0.000
29646.m001100 Ricinus communis 29646.m001100 I 0.000
29693.m001968 Ricinus communis 29693.m001968 I 0.000
30192.m000545 Ricinus communis 30192.m000545 I 0.000
29646.m001101 Ricinus communis 29646.m001101 I 0.000
SapurV1A.0083s0520 Salix purpurea SapurV1A.0083s0520 I 0.000
SapurV1A.0232s0150 Salix purpurea SapurV1A.0232s0150 I 0.000
SapurV1A.0500s0140 Salix purpurea SapurV1A.0500s0140 I 0.000
SapurV1A.1073s0050 Salix purpurea SapurV1A.1073s0050 I 0.000
SapurV1A.5793s0010 Salix purpurea SapurV1A.5793s0010 I 0.000
SapurV1A.0303s0040 Salix purpurea SapurV1A.0303s0040 I 0.000
SapurV1A.2882s0020 Salix purpurea SapurV1A.2882s0020 I 0.000
SELMODRAFT_89227 Selaginella moellendorffii SELMODRAFT_89227 I 0.000
SELMODRAFT_104521 Selaginella moellendorffii SELMODRAFT_104521 I 0.000
Si004564m.g Setaria italica Si004564m.g I 0.000
Si036075m.g Setaria italica Si036075m.g I 0.000
Solyc05g012840.1 Solanum lycopersicum Solyc05g012840.1 I 0.000
Solyc05g032780.1 Solanum lycopersicum Solyc05g032780.1 I 0.000
Solyc10g018710.1 Solanum lycopersicum Solyc10g018710.1 I 0.000
Solyc07g053410.2 Solanum lycopersicum Solyc07g053410.2 I 0.000
Solyc07g062680.1 Solanum lycopersicum Solyc07g062680.1 I 0.000
Solyc10g008780.1 Solanum lycopersicum Solyc10g008780.1 I 0.000
Solyc12g014140.1 Solanum lycopersicum Solyc12g014140.1 I 0.000
Solyc11g045640.1 Solanum lycopersicum Solyc11g045640.1 I 0.000
Solyc02g077250.2 Solanum lycopersicum Solyc02g077250.2 I 0.000
PGSC0003DMG400012396 Solanum tuberosum PGSC0003DMG400012396 I 0.000
PGSC0003DMG400022964 Solanum tuberosum PGSC0003DMG400022964 I 0.000
PGSC0003DMG400015377 Solanum tuberosum PGSC0003DMG400015377 I 0.000
PGSC0003DMG400026626 Solanum tuberosum PGSC0003DMG400026626 I 0.000
PGSC0003DMG400009406 Solanum tuberosum PGSC0003DMG400009406 I 0.000
Sb01g006020 Sorghum bicolor Sb01g006020 I 0.000
Sb02g003070 Sorghum bicolor Sb02g003070 I 0.000
Sb03g001940 Sorghum bicolor Sb03g001940 I 0.000
TCM_003652 Theobroma cacao TCM_003652 I 0.000
TCM_029442 Theobroma cacao TCM_029442 I 0.000
TCM_031706 Theobroma cacao TCM_031706 I 0.000
Traes_2AL_EA60A06AC Triticum aestivum Traes_2AL_EA60A06AC I 0.000
Traes_2BL_36A3AB3A2 Triticum aestivum Traes_2BL_36A3AB3A2 I 0.000
Traes_5BL_2DDBAA0C2 Triticum aestivum Traes_5BL_2DDBAA0C2 I 0.000
TRAES3BF014900010CFD_g Triticum aestivum TRAES3BF014900010CFD_g I 0.000
TCP2 Vitis vinifera VIT_10s0003g03910 I 0.000
VIT_19s0014g01680 Vitis vinifera VIT_19s0014g01680 I 0.000
VIT_10s0003g00870 Vitis vinifera VIT_10s0003g00870 I 0.000
TCP10 Vitis vinifera VIT_12s0028g02520 I 0.000
AC205574.3_FG006 Zea mays AC205574.3_FG006 I 0.000
GRMZM2G089361 Zea mays GRMZM2G089361 I 0.000
GRMZM2G020805 Zea mays GRMZM2G020805 I 0.000
GRMZM2G115516 Zea mays GRMZM2G115516 I 0.000