Bo9g173400 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo9g173400 T253210_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.958 0.958
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.958 0.958
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.958 0.958
AGL27
M08145_2.00 		Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA1012.1 		0.792 0.792
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g173400.1 MADS box 10 57

Links

Other MADS box family TFs
Other Brassica oleracea TFs

110 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo13628s010 Brassica oleracea Bo13628s010 I 1.000
Bo9g173370 Brassica oleracea Bo9g173370 I 0.979
Bostr.18351s0063 Boechera stricta Bostr.18351s0063 I 0.958
Cagra.1085s0045 Capsella grandiflora Cagra.1085s0045 I 0.958
FLC Arabidopsis lyrata scaffold_601028.1 I 0.958
FLC Arabidopsis thaliana AT5G10140 D 0.958
Bra009055 Brassica rapa Bra009055 I 0.958
Thhalv10014726m.g Eutrema salsugineum Thhalv10014726m.g I 0.958
Bostr.13175s0088 Boechera stricta Bostr.13175s0088 I 0.938
Bra028599 Brassica rapa Bra028599 I 0.938
Bra006051 Brassica rapa Bra006051 I 0.917
Bo3g024250 Brassica oleracea Bo3g024250 I 0.875
Bo3g005470 Brassica oleracea Bo3g005470 I 0.875
Bra022771 Brassica rapa Bra022771 I 0.854
Bra031888 Brassica rapa Bra031888 I 0.851
Bo3g100570 Brassica oleracea Bo3g100570 I 0.830
Bra024350 Brassica rapa Bra024350 I 0.830
Cagra.0450s0030 Capsella grandiflora Cagra.0450s0030 I 0.812
Bo2g166500 Brassica oleracea Bo2g166500 I 0.812
Carubv10020979m.g Capsella rubella Carubv10020979m.g I 0.812
fgenesh2_kg.8__2543__AT5G65050.2 Arabidopsis lyrata fgenesh2_kg.8__2543__AT5G65050.2 I 0.809
AGL31 Arabidopsis thaliana AT5G65050 I 0.809
AGL27 Arabidopsis thaliana AT1G77080 D 0.809
MAF1 Arabidopsis lyrata fgenesh2_kg.2__2000__AT1G77080.2 I 0.792
Cagra.0917s0081 Capsella grandiflora Cagra.0917s0081 I 0.787
Bra024351 Brassica rapa Bra024351 I 0.787
Thhalv10004949m.g Eutrema salsugineum Thhalv10004949m.g I 0.787
Bostr.0568s0285 Boechera stricta Bostr.0568s0285 I 0.787
Carubv10028173m.g Capsella rubella Carubv10028173m.g I 0.771
Bo01054s010 Brassica oleracea Bo01054s010 I 0.771
Thhalv10005413m.g Eutrema salsugineum Thhalv10005413m.g I 0.767
Bra031884 Brassica rapa Bra031884 I 0.766
Bo3g100540 Brassica oleracea Bo3g100540 I 0.766
fgenesh2_kg.233__4__AT5G65050.3 Arabidopsis lyrata fgenesh2_kg.233__4__AT5G65050.3 I 0.766
Bra031886 Brassica rapa Bra031886 I 0.766
POPTR_0003s16840 Populus trichocarpa POPTR_0003s16840 I 0.750
POPTR_0003s16870 Populus trichocarpa POPTR_0003s16870 I 0.750
MAF4 Arabidopsis thaliana AT5G65070 I 0.750
MAF4 Arabidopsis lyrata Al_scaffold_0008_3055 I 0.750
Cagra.0917s0080 Capsella grandiflora Cagra.0917s0080 I 0.750
POPTR_0001s13660 Populus trichocarpa POPTR_0001s13660 I 0.750
Cagra.0917s0078 Capsella grandiflora Cagra.0917s0078 I 0.750
MAF3 Arabidopsis thaliana AT5G65060 I 0.745
MAF5 Arabidopsis thaliana AT5G65080 I 0.745
Lus10036543.g Linum usitatissimum Lus10036543.g I 0.729
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.729
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.727
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.724
Bostr.7867s0083 Boechera stricta Bostr.7867s0083 I 0.708
Eucgr.K02711 Eucalyptus grandis Eucgr.K02711 I 0.708
SapurV1A.1717s0010 Salix purpurea SapurV1A.1717s0010 I 0.708
Aquca_032_00047 Aquilegia coerulea Aquca_032_00047 I 0.708
SapurV1A.1446s0020 Salix purpurea SapurV1A.1446s0020 I 0.708
SapurV1A.0578s0130 Salix purpurea SapurV1A.0578s0130 I 0.708
SapurV1A.0282s0240 Salix purpurea SapurV1A.0282s0240 I 0.708
SapurV1A.2188s0030 Salix purpurea SapurV1A.2188s0030 I 0.708
SapurV1A.5743s0010 Salix purpurea SapurV1A.5743s0010 I 0.708
PDK_20s1674411g001 Phoenix dactylifera PDK_20s1674411g001 I 0.708
PK14825.1 Cannabis sativa PK14825.1 I 0.708
Thhalv10001597m.g Eutrema salsugineum Thhalv10001597m.g I 0.708
SapurV1A.0173s0350 Salix purpurea SapurV1A.0173s0350 I 0.708
SapurV1A.0068s0650 Salix purpurea SapurV1A.0068s0650 I 0.708
MDP0000270062 Malus domestica MDP0000270062 I 0.708
MDP0000248130 Malus domestica MDP0000248130 I 0.708
MDP0000144516 Malus domestica MDP0000144516 I 0.708
MDP0000326906 Malus domestica MDP0000326906 I 0.708
MDP0000574222 Malus domestica MDP0000574222 I 0.708
SapurV1A.0045s0580 Salix purpurea SapurV1A.0045s0580 I 0.708
Pavir.Ib00012 Panicum virgatum Pavir.Ib00012 I 0.708
Pavir.Ab00058 Panicum virgatum Pavir.Ab00058 I 0.708
MDP0000135652 Malus domestica MDP0000135652 I 0.708
POPTR_0003s16850 Populus trichocarpa POPTR_0003s16850 I 0.708
OBART03G01800 Oryza barthii OBART03G01800 I 0.708
OB07G27140 Oryza brachyantha OB07G27140 I 0.708
OB03G11760 Oryza brachyantha OB03G11760 I 0.708
OGLUM03G01750 Oryza glumaepatula OGLUM03G01750 I 0.708
OLONG_010918 Oryza longistaminata OLONG_010918 I 0.708
OPUNC03G01630 Oryza punctata OPUNC03G01630 I 0.708
ONIVA03G01420 Oryza nivara ONIVA03G01420 I 0.708
OMERI03G01730 Oryza meridionalis OMERI03G01730 I 0.708
MTR_4g102530 Medicago truncatula MTR_4g102530 I 0.708
GRMZM2G171365 Zea mays GRMZM2G171365 I 0.708
Bra000392 Brassica rapa Bra000392 I 0.708
Bo4g024840 Brassica oleracea Bo4g024840 I 0.708
Bo1g031900 Brassica oleracea Bo1g031900 I 0.708
Bra004927 Brassica rapa Bra004927 I 0.708
Bra013662 Brassica rapa Bra013662 I 0.708
GRMZM2G026223 Zea mays GRMZM2G026223 I 0.708
GLYMA03G02191 Glycine max GLYMA03G02191 I 0.708
ORGLA03G0015400 Oryza glaberrima ORGLA03G0015400 I 0.708
ORUFI03G01510 Oryza rufipogon ORUFI03G01510 I 0.708
Ca_16423 Cicer arietinum Ca_16423 I 0.708
Solyc02g089200.2 Solanum lycopersicum Solyc02g089200.2 I 0.708
Si038257m.g Setaria italica Si038257m.g I 0.708
Cla002664 Citrullus lanatus Cla002664 I 0.708
cassava15798.m1 Manihot esculenta cassava15798.m1 I 0.708
mgf006616m Mimulus guttatus mgf006616m I 0.708
Cucsa.392160 Cucumis sativus Cucsa.392160 I 0.708
cassava28648.m1 Manihot esculenta cassava28648.m1 I 0.708
mgf021705m Mimulus guttatus mgf021705m I 0.708
Si010898m.g Setaria italica Si010898m.g I 0.708
POPTR_0001s08510 Populus trichocarpa POPTR_0001s08510 I 0.708
PGSC0003DMG400001377 Solanum tuberosum PGSC0003DMG400001377 I 0.708
MADS50 Oryza sativa OS03G0122600 D 0.708
POPTR_0003s16820 Populus trichocarpa POPTR_0003s16820 I 0.708
POPTR_0006s04730 Populus trichocarpa POPTR_0006s04730 I 0.708
PRUPE_ppa022942mg Prunus persica PRUPE_ppa022942mg I 0.708
POPTR_0014s07020 Populus trichocarpa POPTR_0014s07020 I 0.708
Sb06g026300 Sorghum bicolor Sb06g026300 I 0.708
GLYMA08G11110 Glycine max GLYMA08G11110 I 0.702